Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1379 ATGGCGCTGCACTCTGTAGCGTCCGTTTCTCAAGTCCTTCTTCGCCCTTCCGCGCCATTTCCTTCCAACCTCCACGCTCACTGGCTCGTTGACTTCGCTCCTCTCGGCCGTAAACCTAAGCGCCGCAACCGCAGATTCACGCCGTCGATCAGTTCTGTTCCGCTTCGTCGTTCCGCTGTTCTCAACGTTCACCGCGTCCCTCACTCTCCTCCTCCTCCTCCTTCTTCTTCGTCTTCCGATTTGAAACCACAGGTTGCAAACTTGGATGATATATTATCAGAAAGAGGAGCCTGTGGTGTTGGATTCATTGCCAATTTGGAAAATAAGGCATCACATGTAATTGTCAAGGATGCTTTAACTTCTTTAAGCTGTATGGAACATCGTGGTGGCTGTGGAGCGGATAATGACTCTGGTGATGGTGCTGGGCTGATGACTGCAATTCCATGGGATCTATTCGACAATTGGGCTGACAAACAAGGGATTGCTTCCTTTGATAAGTTGCACACTGGTGTTGGAATGGTTTTCCTACCCAAAAGTGTAGAACTCTTGAATGAGGCCAAGAAAGTTATTGTAAGTATTTTTCAGCAAGAAGGTCTTGAGGTGCTTGGGTGGAGGCCTGTCCCTGTAAATACTTCTATTGTAGGTTTTTATGCGAAGGAGACCATGCCCAATATACAGCAGGTATTTGTTAAGATCGGGAAAGAAGAAAATGCCGATGACATTGAACGAGAACTGTACATCTGTCGTAAATTGATTGAAAAAGCTGTAAGCTCAGAAAGTTGGGCAAATGAGCTTTATTTCTGTTCTTTATCCAATCAAACAATAGTTTACAAGGGGATGCTTCGCTCACAAGTTCTTGGGTTGTTTTATTCTGACCTTCAAAACGATCTTTATAAATCCCCCTTTGCCATTTATCATCGAAGGTATAGCACAAATACTAGCCCCAGATGGCCTCTTGCACAACCAATGAGGCTTCTTGGTCATAATGGAGAGATCAACACCATACAGGGGAACTTGAATTGGATGCAATCACGAGAGCCATCGTTGAAGTCACCTGTATGGCGAGGTCGTGAAAATGAAATTCGTCCATTTGGAAATCCAAAGGCATCAGACTCAGCAAATCTTGACAGTACTGCAGAATTATTAATAAGAAGTGGTCGTAGTCCTGAGGAAGCTATGATGATTCTTGTTCCCGAGGCTTATAAAAATCATCCAACTCTGACAATCAAATACCCAGAGGTGCTTGACTTTTATGACTACTACAAGGGTCAGATGGAAGCTTGGGATGGACCTGCCTTGCTTTTATTCAGTGATGGAAAAACTGTAGGTGCTTGTCTTGATCGTAATGGACTTCGACCTGCTAGGTTTTGGCGAACATCAGACAATATGGTTTACGTTGCCTCAGAGGTTGGTGTTATACCAGTGGATGAATCAAAGGTTATCTCGAAAGGCCGATTAGGTCCAGGCATGATGATAACGGTTGATTTACTTGGTGGTCAGGTCTATGAGAATACGGAGGTTAAAAAACGAGTAGCCTTATCAAATCCATATGGGGACTGGATCAAGGAAAATCTGCGGTCTTTGAAGGCTGAGAACTTCCTTTCAACCTCTGTTATGGAGAATGACGCAATATTAAGACAACAACAGGCATTTGGGTACTCCAGTGAAGATGTCCAGATGGTGATTGAGGCTATGGCTGGTCAGGGAAAGGAGCCAACTTTTTGCATGGGAGATGATATTCCATTGGCAGCATTGTCTCAGAAACCTCACATGCTTTTCGATTATTTTAAGCAACGGTTTGCACAGGTCACAAATCCTGCAATTGATCCTCTTCGAGAAGGATTAGTTATGTCTCTTGAAGTGAATATAGGGAAGAGAGGGAATATATTGGAAACTGGACCTGAAAACGCATCACAGGTTATATTATCTGGTCCAGTATTGAATGAAGGGGATCTTGAATCATTATTAAACGACCCCTTATTAAAACCGCAAGTATTACCAACATTTTTTGATATAACTAAGGGGATTGACGGTTCCTTGGAGAAAGCATTAAATAAGCTTTGTGAAGCTGCAGATGAAGCTGTTAGAAATGGTTCCCAGCTTCTTATTCTTTCAGACCGTTCAGAAGCACTGGAACCAACACATCCTGCAATTCCAATACTTCTTGCTGTTGGTACTGTTCATCAGCATCTAATCCAGAATGGCCTGCGGATGTCGGCATCAATTATAGCGGATACTGCTCAGTGCTTTAGCACTCATCAGTTTGCCTGTTTAATAGGATATGGTGCAAGTGCTGTGTGTCCATACTTGGCACTGGAGACATGCCGACAATGGCGTCTTAGTAGTAAAACTGTAAATTTGATGAGGAATGGAAAGATGCCTACTGTATCAATTGAACAAGCACAGAAGAATTACTGCAAGGCTGTAAAAGCAGGTCTTCTTAAAATTCTTTCCAAAATGGGCATCTCATTGCTTTCAAGTTACTGTGGTGCACAGATATTTGAGGTCTATGGATTAGGGAAGGAAGTTGTGGATCTTGCATTCAGAGGAAGCGTGTCAAAAATTGGTGGATTAACCTTTGATGAGCTTGCAAGAGAGACTTTGTCTTTCTGGGTGAAAGCGTTCTCTGAAGATACGGCAAAAAGATTGGAAAATTTTGGGTTTATACAGTTCAGACCAGGAGGTGAGTTTCATGCAAATAATCCAGAAATGTCAAAGTTGCTCCACAAAGCTGTTCGTCAGAAAAGTCAAAGTTCCTTTGCAGTTTATCAGCAACATTTGGCTAACCGACCTGTGAATGTTCTTCGTGATCTTCTTGAGTTTAAAAGTGATCGTGCTCCAATACCTGTAGGAAAGGTTGAACCTGCTTCATCTATCGTGCAACGGTTTTGCACTGGGGGCATGTCACTTGGAGCTATTTCAAGAGAAACTCATGAAGCAATTGCAATCGCAATGAATAGATTAGGTGGAAAATCAAATTCTGGGGAAGGTGGTGAGGATCCTATTCGCTGGAAACCACTTTCAGATGTCGTGGATGGTTACTCTCCAACACTTCCACATCTTAAAGGTCTTCAAAATGGGGATACTGCAACAAGTGCCATCAAGCAGGTTGCTTCAGGAAGGTTTGGTGTCACACCAACATTCTTGGCAAATGCTGCTCAATTGGAAATCAAAATTGCACAAGGTGCGAAGCCTGGTGAAGGTGGACAATTGCCTGGGAAAAAAGTTAGCATGTACATTGCAAGGTTGAGAAATTCTAAACCAGGGGTTCCTCTTATATCTCCACCTCCTCATCATGACATTTATTCTATTGAGGATCTTGCTCAATTGATCTTCGATCTTCATCAGGTGAATCCTAAGGCGAAGGTATCAGTAAAACTGGTGGCTGAAGCTGGAATCGGTACTGTTGCATCTGGGGTTGCAAAGGGCAATGCTGATGTTATACAGATTTCAGGGCATGATGGGGGTACGGGAGCAAGCCCTATAAGTTCCATCAAACATGCAGGAGGTCCTTGGGAGCTTGGACTTACAGAAACTCACCAGACACTCATTGAAAATGGACTTAGAGAAAGAGTCATTCTCCGAGTTGATGGTGGATTTAGAAGTGGAGTTGATGTCATGATGGCAGCAACAATGGGTGCTGATGAATATGGGTTTGGTTCAGTGGCAATGATTGCTACTGGATGTGTTATGGCCCGCATTTGCCACACCAATAATTGCCCTGTTGGTGTTGCTAGCCAGAGGGAAGAGTTGCGTGCACGATTTCCCGGTGTTCCTGGTGATCTTGTCAACTACTTTTTATATGTGGCTGAAGAGGTAAGAGGCACGTTGGCACAGCTGGGGTATGAGAAGTTAGATGACATAATTGGTCGAACAGACTTATTGCATCCAAGAGACATATCTCTAGTGAAAACTCAGCATCTGGATCTAAGTTATATCCTCTCTAGTGTTGGGTTACCTAAATGGAGCAGTACAACCATCAGGAATCAGGAGACTCATACCAATGGTCCTGTTCTGGATGATGTTTTGCTAGCAGACCCAGAGGTTGCAGATGCCATTGAAAATGAAAAGACTGTTAGTAAGACGATAAAAATATACAACATTGATCGTGCTGTTTGTGGGCGTATAGCTGGTGTCATTGCAAAGAAGTATGGTGATACTGGTTTTGCTGGACTGTTGAATATAACATTTACTGGAAGTGCTGGGCAGTCATTTGCGTGCTTTCTGACACCTGGAATGAAAATTCGCCTTGTTGGAGAGTCTAATGATTATGTGGGGAAGGGCATGGCGGGGGGTGAGCTAGTTGTGACTCCAGTCGACAATACAGGTTTTCAGCCTGAGGATGCAGCTATTGTGGGCAACACTTGCTTGTATGGGGCAACTGGTGGACAGGTTTTCATTAGAGGGAAGGCTGGGGAAAGATTTGCTGTCAGAAACTCACTTGCTGAAGCTGTGGTTGAAGGCACAGGAGATCATTGTTGTGAGTACATGACCGGTGGCAGCGTGGTTGTCTTGGGAAAAGTGGGTAGAAATGTAGCTGCTGGAATGACAGGAGGGTTGGCTTACCTTCTTGATGAAGACGATACTCTAATTCCCAAGGTAAACAGAGAAATTGTTAAAATTCAACGAGTAACAGCGCCAGTGGGGCAGATGAAGCTGAGAAGCCTTATTGAAGCCCATGTTGAGAAAGCCGGTAGTGGCAAAGGTGCGGCTATTCTGAAGGATTGGGATAAGTATTTGTCATTATTTTGGCAGCTGGTTCCACCTAGTGAAGAAGATACCCCTGAGGCTAATGCCAAGTTTGGCACCACAACTTCAGAGCAGGTCACTTTGCAGTCTGCTTAG 4845 0.4388 MALHSVASVSQVLLRPSAPFPSNLHAHWLVDFAPLGRKPKRRNRRFTPSISSVPLRRSAVLNVHRVPHSPPPPPSSSSSDLKPQVANLDDILSERGACGVGFIANLENKASHVIVKDALTSLSCMEHRGGCGADNDSGDGAGLMTAIPWDLFDNWADKQGIASFDKLHTGVGMVFLPKSVELLNEAKKVIVSIFQQEGLEVLGWRPVPVNTSIVGFYAKETMPNIQQVFVKIGKEENADDIERELYICRKLIEKAVSSESWANELYFCSLSNQTIVYKGMLRSQVLGLFYSDLQNDLYKSPFAIYHRRYSTNTSPRWPLAQPMRLLGHNGEINTIQGNLNWMQSREPSLKSPVWRGRENEIRPFGNPKASDSANLDSTAELLIRSGRSPEEAMMILVPEAYKNHPTLTIKYPEVLDFYDYYKGQMEAWDGPALLLFSDGKTVGACLDRNGLRPARFWRTSDNMVYVASEVGVIPVDESKVISKGRLGPGMMITVDLLGGQVYENTEVKKRVALSNPYGDWIKENLRSLKAENFLSTSVMENDAILRQQQAFGYSSEDVQMVIEAMAGQGKEPTFCMGDDIPLAALSQKPHMLFDYFKQRFAQVTNPAIDPLREGLVMSLEVNIGKRGNILETGPENASQVILSGPVLNEGDLESLLNDPLLKPQVLPTFFDITKGIDGSLEKALNKLCEAADEAVRNGSQLLILSDRSEALEPTHPAIPILLAVGTVHQHLIQNGLRMSASIIADTAQCFSTHQFACLIGYGASAVCPYLALETCRQWRLSSKTVNLMRNGKMPTVSIEQAQKNYCKAVKAGLLKILSKMGISLLSSYCGAQIFEVYGLGKEVVDLAFRGSVSKIGGLTFDELARETLSFWVKAFSEDTAKRLENFGFIQFRPGGEFHANNPEMSKLLHKAVRQKSQSSFAVYQQHLANRPVNVLRDLLEFKSDRAPIPVGKVEPASSIVQRFCTGGMSLGAISRETHEAIAIAMNRLGGKSNSGEGGEDPIRWKPLSDVVDGYSPTLPHLKGLQNGDTATSAIKQVASGRFGVTPTFLANAAQLEIKIAQGAKPGEGGQLPGKKVSMYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQVNPKAKVSVKLVAEAGIGTVASGVAKGNADVIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIENGLRERVILRVDGGFRSGVDVMMAATMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNYFLYVAEEVRGTLAQLGYEKLDDIIGRTDLLHPRDISLVKTQHLDLSYILSSVGLPKWSSTTIRNQETHTNGPVLDDVLLADPEVADAIENEKTVSKTIKIYNIDRAVCGRIAGVIAKKYGDTGFAGLLNITFTGSAGQSFACFLTPGMKIRLVGESNDYVGKGMAGGELVVTPVDNTGFQPEDAAIVGNTCLYGATGGQVFIRGKAGERFAVRNSLAEAVVEGTGDHCCEYMTGGSVVVLGKVGRNVAAGMTGGLAYLLDEDDTLIPKVNREIVKIQRVTAPVGQMKLRSLIEAHVEKAGSGKGAAILKDWDKYLSLFWQLVPPSEEDTPEANAKFGTTTSEQVTLQSA* 1615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1379 1614 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 98 634 IPR029055 -
Lja1g1379 1614 Pfam Glutamate synthase central domain 547 839 IPR006982 GO:0006807|GO:0015930
Lja1g1379 1614 PANTHER FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, CHLOROPLASTIC/MITOCHONDRIAL 56 1613 - -
Lja1g1379 1614 SUPERFAMILY FMN-linked oxidoreductases 542 1320 - -
Lja1g1379 1614 MobiDBLite consensus disorder prediction 1591 1614 - -
Lja1g1379 1614 CDD gltB_C 1339 1589 IPR002489 GO:0016491
Lja1g1379 1614 PANTHER FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 56 1613 - -
Lja1g1379 1614 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 98 497 IPR017932 -
Lja1g1379 1614 Pfam Conserved region in glutamate synthase 898 1282 IPR002932 GO:0006537|GO:0015930|GO:0016638
Lja1g1379 1614 MobiDBLite consensus disorder prediction 1597 1614 - -
Lja1g1379 1614 Pfam GXGXG motif 1364 1546 IPR002489 GO:0016491
Lja1g1379 1614 CDD GltS_FMN 901 1296 IPR002932 GO:0006537|GO:0015930|GO:0016638
Lja1g1379 1614 Pfam Glutamine amidotransferases class-II 98 520 IPR017932 -
Lja1g1379 1614 Gene3D Aldolase class I 524 890 IPR013785 -
Lja1g1379 1614 CDD GltS 98 515 - -
Lja1g1379 1614 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 98 524 IPR029055 -
Lja1g1379 1614 SUPERFAMILY Alpha subunit of glutamate synthase, C-terminal domain 1333 1595 IPR036485 GO:0016491
Lja1g1379 1614 Gene3D - 1320 1595 IPR036485 GO:0016491
Lja1g1379 1614 Gene3D Aldolase class I 572 1298 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1379 Lja-Chr1 14659888 14687454 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1379 K00284 - gmx:548016 2959.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1379 1 14659888 14687454 Lja1g1379 1 14659888 14687454 ECH