Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1370 ATGGATACTTTGCTCAAAACACCTAACAAGCTTGGATTTTTGCATCCACTTCATGGTTATTCAGAGAAATTGAACAATTCAGGGTCCTCTAGGTTGGAGTTTAGGTTTGGTTCCAAGAAACCAGTGGTGAAGTGGGGTGGATGTGGTGGTGGTTTGAGGGCTAGTAGCAGTGCCCTTCTAGAGCTTGTTCCAGAGGTCAAGAAGGAGAATCTGGATTTTGAACTTCCTTTGTATGATTCGATGAAGGGAGCTGTTGTCGATCTCGCGGTTGTGGGAGGAGGCCCTGCAGGGCTTGCAGTTGCTCAGCAGGTTTCTGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCAAACCCTAGGTTGATTTGGCCCAATAATTATGGTGTTTGGGTGGATGAATTTGAAGCCATGGATTTGCTTGATTGCCTTGACACCACTTGGTCTGGTGCTGTTGTCTACATTGATGACAAAACAAAGAAGTATCTAGATAGACCTTATGGTAGGGTTAATAGGAAGCTGTTGAAGTCAAAGATGCTGCAAAAATGCATTTCAAATGGTGTCAAGTTTCACCAGGCTAAAGTCATCAAGGTTATTCATGAGGAATCGAAGTCCATGTTGATTTGCAATGACGGCGTCACTATTCAGGCTACTGTGGTTCTTGATGCAACTGGCTTTTCAAGATCTCTTGTTCAGTATGATAAGCCTTATAATCCAGGTTACCAAGTTGCCTATGGGATTTTAGCTGAGGTTGAGGAGCACCCGTTTGACGTGGATAAAATGCTTTTTATGGACTGGAGAGACTCACATCTGGACAATAATATGGAGCTGAAGGAGAAGAATAGCAGAATACCCACTTTTTTATATGCAATGCCCTTTTCATCCACCAAGATATTTCTTGAAGAAACCTCTCTTGTTGCACGCCCTGGATTGCGTATGGATGATATACAGGACAGAATGGTTGCTAGGCTAAAACACTTGGGCATTAAAGTGAAGAGCATTGAAGAGGATGAGCACTGTGTCATTCCGATGGGTGGCCCCTTACCGGTTCTCCCGCAAAGAGTTATTGGAATCGGTGGTACTGCCGGGATGGTGCATCCTTCAACTGGGTATATGGTAGCAAGGACCCTAGCTGCTGCTCCTATTGTTGCTAATGCTATTGTTCAGTACCTTGGTTCTGATAGAGGCATCTCAGGAGATGGATTATCTTCACTAGTGTGGAAAGATTTATGGCCCATCGAAAGGAGGCGGCAGAGGGAGTTCTTCTGTTTCGGTATGGACATCTTACTCAAGCTTGATTTACCCGGCACGAGGAGATTTTTTGATGCATTTTTTGATCTCGAACCTCATTACTGGCATGGATTCCTATCATCAAGACTGTTTCTTCCAGAGCTGCTAGTTTTTGGTCTCTCTCTATTTTCTTATGCTTCTAATACTTCTAGGATAGAGATTATGGCGAAGGGAACTGTTCCTTTGGTAAATATGATCAACAACTTGATACAAGATAAAGAATAA 1509 0.4354 MDTLLKTPNKLGFLHPLHGYSEKLNNSGSSRLEFRFGSKKPVVKWGGCGGGLRASSSALLELVPEVKKENLDFELPLYDSMKGAVVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYIDDKTKKYLDRPYGRVNRKLLKSKMLQKCISNGVKFHQAKVIKVIHEESKSMLICNDGVTIQATVVLDATGFSRSLVQYDKPYNPGYQVAYGILAEVEEHPFDVDKMLFMDWRDSHLDNNMELKEKNSRIPTFLYAMPFSSTKIFLEETSLVARPGLRMDDIQDRMVARLKHLGIKVKSIEEDEHCVIPMGGPLPVLPQRVIGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVQYLGSDRGISGDGLSSLVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFDAFFDLEPHYWHGFLSSRLFLPELLVFGLSLFSYASNTSRIEIMAKGTVPLVNMINNLIQDKE* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1370 502 Pfam Lycopene cyclase protein 87 479 - -
Lja1g1370 502 SUPERFAMILY FAD/NAD(P)-binding domain 85 469 IPR036188 -
Lja1g1370 502 TIGRFAM carotene-cycl: lycopene cyclase family protein 87 482 IPR010108 GO:0016117|GO:0016705
Lja1g1370 502 PANTHER LYCOPENE BETA CYCLASE, CHLOROPLASTIC 5 502 - -
Lja1g1370 502 PRINTS Pyridine nucleotide disulphide reductase class-I signature 218 227 - -
Lja1g1370 502 PRINTS Pyridine nucleotide disulphide reductase class-I signature 87 109 - -
Lja1g1370 502 Gene3D - 81 423 IPR036188 -
Lja1g1370 502 PANTHER UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6, MITOCHONDRIAL 5 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1370 Lja-Chr1 14529799 14536856 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1370 K06443 - gmx:100783830 905.975