Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1364 ATGGAAGAGAACGGAGGAGGACAACAACTGGTAGCGGCCGAGAACGGTGGTGGTCACGACGGAGCAAGAGAAGCCACATGTCTAAGCATGAAGATGGACGATGGTAGCAGAGAGAGTCACAGGTACTACCTCTCTCGCAGAACCGCATTGGAAATGCTCAAAGACAGAGGCTACACCATTCCCTCCTCCGAAATCCAACTCTCCCTCTCTGAATTCCGTGAAACTCACGGCCAGAAGCCCGACGTCGACCGCCTCCGCTTCTCCGCCACCCACTCCGCCGACCCCTCCAAACGGGTTCTGGTGATTTTCTGTGGTCCTGGTGTGGTTAAGGTCACTTCCATCAGGAACATTGCTGGACAGATTGTTAACAAAGATACCTTGTCTGGGGTCTTGTTGATTGTGGAAAATAATATCACTGGTCAGGCCTTGAAAGCTATCAATCTTTTCTCATTTAAGGTTGAGATTTTTCAGATCACAGATTTGCTTGTTAATATTACAAAGCATGTATTGAAGCCAAAGCATCAGGTGCTGACTGATCGGCAAAAGAAAAATCTTCTGAAGAAGTTCAATATAGAAGAAAAACAGCTTCCCCGTATGCTGCAGTCAGATGCAATCGCTCGATATTATGGACTTCAGAGGGGGCAAGTAGTTAAAGTTACCTTCAGTAGTGGTGAAATCACCCAGCTGCATGTCACATATCGATGCGTTTGGTGA 714 0.4734 MEENGGGQQLVAAENGGGHDGAREATCLSMKMDDGSRESHRYYLSRRTALEMLKDRGYTIPSSEIQLSLSEFRETHGQKPDVDRLRFSATHSADPSKRVLVIFCGPGVVKVTSIRNIAGQIVNKDTLSGVLLIVENNITGQALKAINLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKKFNIEEKQLPRMLQSDAIARYYGLQRGQVVKVTFSSGEITQLHVTYRCVW* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1364 237 Pfam RNA polymerase Rpb5, N-terminal domain 37 120 IPR005571 GO:0003677|GO:0003899|GO:0006351
Lja1g1364 237 Gene3D - 161 237 IPR035913 -
Lja1g1364 237 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A 21 237 - -
Lja1g1364 237 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 36 164 IPR036710 GO:0003677|GO:0003899|GO:0006351
Lja1g1364 237 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 21 237 IPR014381 -
Lja1g1364 237 PIRSF RPB5 31 237 IPR014381 -
Lja1g1364 237 SUPERFAMILY RPB5-like RNA polymerase subunit 161 237 IPR035913 -
Lja1g1364 237 Pfam RNA polymerase Rpb5, C-terminal domain 163 236 IPR000783 GO:0003677|GO:0003899|GO:0006351
Lja1g1364 237 Gene3D - 32 160 IPR036710 GO:0003677|GO:0003899|GO:0006351
Lja1g1364 237 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1364 Lja-Chr1 14477712 14480707 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1364 K03013 - gmx:100306033 352.058