Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1356 ATGGCTTCTAGGATTCTGCGTTCGAAGTCGAGTTCACTGGCGGTGTGTAACAAATTGTGGCGGTTTTCTTACTCCTCTGTGGCTGTGGCAGCTGCTAAACCAGCAGAGAACGTGGCTCTGAAGGATTATGCCGATTACAGAAGATCCCTTTATGGCCAAATCACTCACAAGGCCCTTCTCGTTGATGCTGTTGGCACCCTTGTTCTTCCTTCTCAACCCATGGCCGAGATATATAGGAAGATTGGGGAGAAGTATGGGGTAAACTACTCAGAGGATGAGATATTGAACAGATACAGAAGAGCTTATGGCCAGCCATGGGGTAAATCTCGTCTCAGATATGTTAATGACGGCAGGCCCTTCTGGCAATACATAGTTAGTTATTCTACCGGGTGTTCAGATTCTCAATACTTTGAAGAACTTTATAACTACTATATGACAGACAAGGCATGGCACCTCTGTGATCCTGATGCAGAAGAAGTTTTCAAAGCTCTTAGAAAATCAGGTGTAAAATTGGCTGTTGTGTCAAATTTTGATACTCGGTTAAGACCTCTTCTGAGGGCATTGAAATGTGATAACTGGTTTGATGCAGTTGCTGTTTCAGCTGAGGTTGCAGCCGAGAAGCCAAATCCAACTATATTTCTTAAAGCATGTGAACTATTGGGCGTAAAACCTGAGGATGCTGTTCATGTTGGCGATGATCGTAGAAATGATATATGGGGTGCCAGAGATGCTGGCTGTGATGCTTGGCTTTGGGGAAGCGATGTTCACTCCTTTAAGGAGGACCATCAAGCATGCTCAAGATTAATCATGGAATATTCCATAAGATGCCCTTAA 834 0.4412 MASRILRSKSSSLAVCNKLWRFSYSSVAVAAAKPAENVALKDYADYRRSLYGQITHKALLVDAVGTLVLPSQPMAEIYRKIGEKYGVNYSEDEILNRYRRAYGQPWGKSRLRYVNDGRPFWQYIVSYSTGCSDSQYFEELYNYYMTDKAWHLCDPDAEEVFKALRKSGVKLAVVSNFDTRLRPLLRALKCDNWFDAVAVSAEVAAEKPNPTIFLKACELLGVKPEDAVHVGDDRRNDIWGARDAGCDAWLWGSDVHSFKEDHQACSRLIMEYSIRCP* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1356 277 PANTHER - 18 260 - -
Lja1g1356 277 Gene3D - 72 145 IPR044924 -
Lja1g1356 277 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 57 250 IPR011949 -
Lja1g1356 277 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 56 67 IPR006439 -
Lja1g1356 277 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 164 177 IPR006439 -
Lja1g1356 277 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 194 210 IPR006439 -
Lja1g1356 277 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 212 232 IPR006439 -
Lja1g1356 277 SUPERFAMILY HAD-like 57 261 IPR036412 -
Lja1g1356 277 CDD HAD_dREG-2_like 157 271 - -
Lja1g1356 277 Pfam Haloacid dehalogenase-like hydrolase 65 248 IPR041492 -
Lja1g1356 277 SFLD Haloacid Dehalogenase 57 252 - -
Lja1g1356 277 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 18 260 - -
Lja1g1356 277 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 154 245 IPR006439 -
Lja1g1356 277 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 146 247 IPR006439 -
Lja1g1356 277 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 57 252 - -
Lja1g1356 277 Gene3D - 61 253 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1356 Lja-Chr1 14341902 14347808 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1356 - - gmx:100789672 442.58