Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1350 ATGAAGTTCATCAACATCAACCCCAAAACCCTCAAACTCAGCCCCAAACGCCTCTTCCGATCTTCCAAAAAGGACCACCTCTCCAGATCCGACCCACCCTCTTTCTCCTCCTCCTCCGAGGACTTCTCCACCTCCTCCACCCACAACAAACCCATCAACGGCGGCGGCTTAGGGACCCCCACCAGCGTCCTCCCAGACGACTGGTCCGCCGTCGACGTGCGCTGGGCCTTCCGCCTCATCGACCGCGACAACGACGGCGTCGTGTCGCGGGCCGATCTCGTCGCGGTGCTCACGCGCCTCGGCGCGTTGCAGCTTAGCGATGAAGAGGTAGAGGTTATGCTCCGTGAGGTTGACGGCGACGGGAGGGGTAGTATCAGCGTGGAGGCGCTGATGGAGCGGGTTGGACCCGGGTCGGACCCGGAAACGGAGCTGAGAGAGGCGTTTGAGGTTTTCGACACGGATCGCGACGGGAGAATCTCGGCGGAGGAGCTGTTGAGGGTGTTCACGGCGATCGGCGATGAGCGGTGCACGTTAGACGAGTGCCGGCGCATGATAGAAGGTGTTGATAGGAACGGGGATGGGTTCGTGTGCTTCGAGGACTTTTCGCGTATGATGGAGTTGCAGCGGTGA 630 0.6111 MKFININPKTLKLSPKRLFRSSKKDHLSRSDPPSFSSSSEDFSTSSTHNKPINGGGLGTPTSVLPDDWSAVDVRWAFRLIDRDNDGVVSRADLVAVLTRLGALQLSDEEVEVMLREVDGDGRGSISVEALMERVGPGSDPETELREAFEVFDTDRDGRISAEELLRVFTAIGDERCTLDECRRMIEGVDRNGDGFVCFEDFSRMMELQR* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1350 209 SUPERFAMILY EF-hand 73 205 IPR011992 -
Lja1g1350 209 ProSitePatterns EF-hand calcium-binding domain. 152 164 IPR018247 -
Lja1g1350 209 SMART efh_1 109 137 IPR002048 GO:0005509
Lja1g1350 209 SMART efh_1 180 208 IPR002048 GO:0005509
Lja1g1350 209 SMART efh_1 72 100 IPR002048 GO:0005509
Lja1g1350 209 SMART efh_1 143 171 IPR002048 GO:0005509
Lja1g1350 209 CDD EFh 72 134 IPR002048 GO:0005509
Lja1g1350 209 MobiDBLite consensus disorder prediction 31 56 - -
Lja1g1350 209 ProSiteProfiles EF-hand calcium-binding domain profile. 176 209 IPR002048 GO:0005509
Lja1g1350 209 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 8 207 - -
Lja1g1350 209 CDD EFh 143 205 IPR002048 GO:0005509
Lja1g1350 209 ProSiteProfiles EF-hand calcium-binding domain profile. 139 174 IPR002048 GO:0005509
Lja1g1350 209 ProSitePatterns EF-hand calcium-binding domain. 81 93 IPR018247 -
Lja1g1350 209 Gene3D - 61 132 - -
Lja1g1350 209 ProSitePatterns EF-hand calcium-binding domain. 189 201 IPR018247 -
Lja1g1350 209 Gene3D - 133 209 - -
Lja1g1350 209 PANTHER CALCIUM-BINDING PROTEIN CML35-RELATED 8 207 - -
Lja1g1350 209 Pfam EF-hand domain pair 142 205 IPR002048 GO:0005509
Lja1g1350 209 Pfam EF-hand domain pair 73 128 IPR002048 GO:0005509
Lja1g1350 209 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Lja1g1350 209 MobiDBLite consensus disorder prediction 22 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1350 Lja-Chr1 14230760 14231999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1350 9 209 EF-hand Containing Proteins AT3G10190 54.545 1.10e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1350 K13448 - gmx:100815559 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1350 1 14230760 14231999 Lja1g1350 1 14230760 14231999 ECH