Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1338 ATGGCTATCTTGTTATCTTCAATTGTACTTCCTTCCACCAAGCTCAGCTCCAAGCTACCCATCTTCAACAACACGCAGGAGCACGCACTTCCAACTCTTCGCCATTTCACAGATTCTAGTAAGCGCTTCGAGAAAGTTTCGAACTTGGTTGCTCTAGCAGTAAATGGTCAGAGAAATCCTGTTAACACTACGCCCAGGAGAGATGGTAGAAACCCGTTTTTGAGTGAGGGGAGGGATGAAGATGAAGCTCGTGGACCCATTTGCCCTGGTTGTGGAGTGTTTATGCAGGATAGAGATCAGAACCTTCCTGGGTTTTACCAACAAAGGGAGGTGAAAGTGGAGGAGTTTTCTGAAGAGGATGATGGGTTTGATGATATTGATGATGATGATGATGGTGGTGTGGGGGAAGAAGTGGAAGAAGATGATGGTGAAGTGGGGGTTTTGGATAGTAGTGAGAGTAAGCATGAAGAAGATACTGAGGAGTTGGCTGACGAGTTTGATTGGGATTCTGATGATTGGGAAGCTAAGTTATTGGGGGAAGATGATGATAATAAGCTGGAATTGGAATTGGAGGCGTTTGCACCAGCTGGGGTTGGTTATGGTAACGTTACCGAGGAGGTGCTGGAGAGGGCGAAGAAGAAGAAGGTGTCGAAGGCTGAGAAGAAGAAGATGGCTAGGGAGGCTGAGAAGGTGAAAGAGGAGGTTACTGTGTGTGCTAGGTGTCATTCCTTGAGGAATTACGGGCAGGTGAAGAACCAGTCAGCTGAGAATTTGATACCTGATTTCGATTTCGATAGGCTGATTTCTACTAGGTTGATGAATCCTTCTGGTAGTGGCAGTTCTACTGTTGTTGTTATGGTTGTGGATTGTGTTGATTTTGATGGTTCTTTTCCTAGAACTGCGGTGAAATCGCTGTTTAAGGCGTTGGAGAAAACCCAGGTTAACTCGAAGCGGGGAAATAAACTGCCAAAGCTTGTTCTCGTGGCGACGAAGGTTGATCTCCTTCCGTCCCAGGTTTCTCCTACAAGGTTAGATAGATGGGTTCGACACCGTGCAAGTGCTGAAGGAGCGCCTAAGTTAAGTGCGGTTTATTTGGTCAGTTCTAGAAAGGATTTAGGCATAAGGAATTTGTTGTCCTTCGTAAAAGATTTGGCTGGTCCTCGCGGGAATGTGTGGGTAATTGGGGCTCAGAATGCAGGGAAGTCTACTCTGATCAATGCATTTGCAAAGAAACAAGGAGCCAAAGTTTCAAAGCTCACAGAAGCTCCAGTTCCGGGGACGACACTCGGCATCTTGAGAATTGGAGGAATTTTGCCAGCTAAGACTAAGATGTTTGACACTCCAGGGCTCTTGCATCCGTATTTAATGTCAATGAGATTAAATCGGGAGGAACAAAAGATGGTTGAGATACGGAAGGAACTTCGGCCTCGGACATATAGAATTAAGGTAGGACAGTCTATACATGTTGGTGGCTTGACCAGACTCGACCTTATTGAAGCCTCTGTTGAAACAATATATGTCACAGTTTGGGCATCACCAAATGTTTCTCTGCACATGGGGAAAATAGAAAATGCTGATGAGGTTTGGAAAAATCATGTTGGTGTCAGGCTGCAGCCTCCCATTAGTAGTGACCGTGCTGCTGAATTAGGCACATGGCAAGAAAAAGAAGTGAAAGCATCTGGATCTAGCTGGGATGTCAACAGCATTGATGTGGCAATAGCTGGTTTAGGGTGGTTCTCTTTAGGTCTCAAAGGAGAAGCAACCCTGAAATTATGGACCTTTGATGGAGTTGATGTTACTTTCAGAGAGCCTTTGGTGCTTGACCGGGCCCCAGTCCTTGAGAAACCAGGTTTTTGGTTACCAAAAGCTATCTCTGATGCAATCGGCAACCAAACTAAACTTGAGGCTCAAAGAAGGAAAAAACTTGAAGAAGAAGAGGATATGGAATATGTGGGGGCAGGGGCAGAGATATCTGCATGA 1980 0.4556 MAILLSSIVLPSTKLSSKLPIFNNTQEHALPTLRHFTDSSKRFEKVSNLVALAVNGQRNPVNTTPRRDGRNPFLSEGRDEDEARGPICPGCGVFMQDRDQNLPGFYQQREVKVEEFSEEDDGFDDIDDDDDGGVGEEVEEDDGEVGVLDSSESKHEEDTEELADEFDWDSDDWEAKLLGEDDDNKLELELEAFAPAGVGYGNVTEEVLERAKKKKVSKAEKKKMAREAEKVKEEVTVCARCHSLRNYGQVKNQSAENLIPDFDFDRLISTRLMNPSGSGSSTVVVMVVDCVDFDGSFPRTAVKSLFKALEKTQVNSKRGNKLPKLVLVATKVDLLPSQVSPTRLDRWVRHRASAEGAPKLSAVYLVSSRKDLGIRNLLSFVKDLAGPRGNVWVIGAQNAGKSTLINAFAKKQGAKVSKLTEAPVPGTTLGILRIGGILPAKTKMFDTPGLLHPYLMSMRLNREEQKMVEIRKELRPRTYRIKVGQSIHVGGLTRLDLIEASVETIYVTVWASPNVSLHMGKIENADEVWKNHVGVRLQPPISSDRAAELGTWQEKEVKASGSSWDVNSIDVAIAGLGWFSLGLKGEATLKLWTFDGVDVTFREPLVLDRAPVLEKPGFWLPKAISDAIGNQTKLEAQRRKKLEEEEDMEYVGAGAEISA* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1338 659 Gene3D - 277 453 IPR027417 -
Lja1g1338 659 MobiDBLite consensus disorder prediction 115 165 - -
Lja1g1338 659 MobiDBLite consensus disorder prediction 117 146 - -
Lja1g1338 659 CDD YqeH 238 450 - -
Lja1g1338 659 Pfam 50S ribosome-binding GTPase 391 465 IPR006073 GO:0005525
Lja1g1338 659 Coils Coil 208 234 - -
Lja1g1338 659 PANTHER GENETIC INTERACTOR OF PROHIBITINS 3, MITOCHONDRIAL 1 647 - -
Lja1g1338 659 MobiDBLite consensus disorder prediction 58 84 - -
Lja1g1338 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 500 IPR027417 -
Lja1g1338 659 PANTHER GTP-BINDING PROTEIN BRASSINAZOLE INSENSITIVE PALE GREEN 2, CHLOROPLASTIC 1 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1338 Lja-Chr1 14106808 14116909 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1338 - - gmx:100805561 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1338 1 14106808 14116909 Lja1g1338 1 14106808 14116909 ECH