Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1334 ATGCGATTTTTAAGGCCTTTTCTCTCATCCTCTCTTCTCTGCCACTCGCATCAGAACAGAATTGGAGAAATTGTGACCAGGATTCGTCTGAACGCCCGCTTGCTTTCTTCTGCAGTTTCAGCTGAAGCTTCAGATTTAGAATGTGATGAGCTCTATGATGATGTCAAAGCTGCAGAGAGAAAGAAAACACTTTGCTTGGCTGTCTCACAGCTAGCTAGTGAGTTTAGCAGGGAGTCAATGTTATCTCCGCAGAAGTTTTTTGGTGTACGCCAGGCTCGTGTGGTATCTACAGGCTCATTGAAGCTTGACCTAGCTCTTGGAATTGGAGGATTACCAAAGGGCAGGATTATAGAAATTTATGGACGAGAAGCAGCTGGTAAGACAACACTTGCACTTCAGATTATTAAGGAAGCTCAAAAGCTTGGAGGATATTGTGCATATCTTGATGTAGAAAATGCACTGGACCTTTCACTTGTGGAATCAATTGGTGTAAATACCGAAAACCTTCTTGTCCCACATCCTGATTGTGCTGAAAATTTGTTGAGCATGGTCGATACGTTAACAAAAAGTGGAGCTGTAGATGTGATTGTGGTTGATAGTGTCGCTGCCCTTGTCCCCAAATGCGAACTTGATCAATTAGGAGTTAGTACAAGAAAAGATTTACATTCGCAAATGATGACTCAAGCCCTACGGAAAATTCATTATTCATTATCCCACTCGCAAACTATTCTCATTTTTGTTAATCAGATTAGATTTAGTTCAAAAGCATTTAGCGGACGTGGATCTATGGAAGAGGTCACCTGTGGTGGAAACGCTTTGAGATTCTATGCAGCTGTTCGTTTGAGACTTTCAAGATTGGGATTGATCAAAACTGAGGATAAGGTAGAGGGTACTCAGATCTGTGTGCAAGTGGTAAAGAATAAACTAGCACCGGCGACAATGAAAAAGGCTGAGCTGGGTATCAAGTTTGGAAGAGGCTTTTGCCATGAATCTGAGGTCTTTGATTTGGCTTGTGACCATGGAATCATTATAAAAGATGAGGGGAGCTACTTGATTGAAGGGGAAACTTTTAGTAGTAGAGAGGCTGCTGAACTATTTTTGGCTAAAAATGAAGGGGTTTGTGATAAGTTAATTATGGACATTAGAAGATTTTATTTTTGA 1161 0.41 MRFLRPFLSSSLLCHSHQNRIGEIVTRIRLNARLLSSAVSAEASDLECDELYDDVKAAERKKTLCLAVSQLASEFSRESMLSPQKFFGVRQARVVSTGSLKLDLALGIGGLPKGRIIEIYGREAAGKTTLALQIIKEAQKLGGYCAYLDVENALDLSLVESIGVNTENLLVPHPDCAENLLSMVDTLTKSGAVDVIVVDSVAALVPKCELDQLGVSTRKDLHSQMMTQALRKIHYSLSHSQTILIFVNQIRFSSKAFSGRGSMEEVTCGGNALRFYAAVRLRLSRLGLIKTEDKVEGTQICVQVVKNKLAPATMKKAELGIKFGRGFCHESEVFDLACDHGIIIKDEGSYLIEGETFSSREAAELFLAKNEGVCDKLIMDIRRFYF* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1334 386 ProSitePatterns recA signature. 272 280 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lja1g1334 386 PANTHER DNA REPAIR PROTEIN RECA HOMOLOG 2, MITOCHONDRIAL 24 386 - -
Lja1g1334 386 Coils Coil 41 61 - -
Lja1g1334 386 PANTHER RECA 24 386 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja1g1334 386 ProSiteProfiles RecA family profile 1. 91 250 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lja1g1334 386 PRINTS RecA protein signature 303 332 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja1g1334 386 PRINTS RecA protein signature 221 250 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja1g1334 386 PRINTS RecA protein signature 183 212 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja1g1334 386 PRINTS RecA protein signature 149 178 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja1g1334 386 PRINTS RecA protein signature 269 297 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja1g1334 386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 314 IPR027417 -
Lja1g1334 386 SMART AAA_5 113 287 IPR003593 -
Lja1g1334 386 Gene3D - 90 382 IPR027417 -
Lja1g1334 386 ProSiteProfiles RecA family profile 2. 254 332 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lja1g1334 386 Pfam recA bacterial DNA recombination protein 63 327 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1334 Lja-Chr1 14037582 14044139 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1334 - - var:108318700 572.778