Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1331 ATGGTGTCAAAACTCGCTGGTTTCTATGAACATAATACTTTTTCATTAATGAAAATCATCATACTTCTTAATTTTATACTTCACAAAGCTGACTCTGGTTGCAACAACTCTGTTTTCACTTCAATAGTTTCATTTCCACCCTATGAGATCCTTTCATCACTGCAAGCACTACCTCTTGAAGGCCAATGGAGCTTAAGGGACAATGAAAATGCAGCCAAGGACTTTGGCAACATTTTTCATTTTCCTCCTCTAGCAGTGCTATATCCAAAAACAGTTGCTGATATCTCACTTACCATAAAGCATGTTTTTGAAATGGGCTCTGCATCAGAATTGAAGGTTGCTGCTAGAGGCCATGGACATTCCCTTCAGGGTCAGGCACAGGTACATGGAGGAATAGTCATCAACATGGAGTCACTGCAGGGTCATGAAATGAAAGTTCACAGGGGAGAGTTCCCTTTTGTGGATGTCTCAGGGGGTGAGTTGTGGATAAACATTCTGCATGAAACTCTGAAACATGGGTTGGCACCAAAGTCTTGGACAGATTACCTTCATCTCACTGTTGGGGGAACTCTTTCAAATGCTGGAATTAGTGGACAAGCCTTCAAGCATGGACCCCAGATCAGTAACACCTTGCAGTTGGAAGTAGTCACAGGAAAAGGAGAGGTGGTTACCTGCTCAGAGAACCGAGATGCTGACCTTTTCCATGGTGTTCTTGGAGGGCTTGGTCAATTTGGCATCATCACCAGGGCTAGAATTTCTCTTGAACCAGCGCAGAAGATGGTAAAATGGATCAGGGTGCTCTACTCAGAATTCTCTACATTTACCAGGGACCAAGAGTATTTGATATCACTCAAAGACACATTTGATTATATTGAAGGATTTGTGATCATAAATAGCACCGGCATCCTTAACCATTGGAGATCATCATTCGACCCCAAAGACCCACTTCAAGCCAGCCAATTCAATTCAGATGGGAGGACCTCCTACTGCCTTGAGATGGCAAAATACTTCAACCCAGATGAAGCTGAAGCCATGAATCAGAGTGTTGATCACCTACTGTCACAACTGAGTTATATTCCACCCACACTCTTCCTATCAGAAGTTTCTTACGTGGAATTCCTGGATAGAGTGCATGTTTCTGAGAACATGCTAAGAGAAAAAGGCTTATGGGAAGTTCCTCATCCTTGGCTAAACCTTCTAATCCCAAGGAGTGAGATTCATGCCTTTGCTGAAGAGGTGTTTGGCAATATTCTTAAGGATACAAGTAATGGTCCCATACTCATTTACCCTGTCAACCAAACAAGGTGGAACAGTAAAACATCTTTGGTTACCCCAGAGGAAGATGTTTTCTACCTGGTGGCATTCCTATCCTCTGCAGTACCATCTTCTACTGGTATAAACAGTTTAGAATACATTCTAACCCAAAACAAGAGGATCTTAGATTTCTGCACCAATGCTCAACTCAATGTGAAGCAGTATCTTCCCCATTACAGCACACAGGAAGAATGGCAAGCCCATTTTGGGTCAAGATGGGAGGCATTGGTGGAAAGAAAAAGAGTCTATGACCCACTGGCGCTGCTTGCCCCTGGCCATAGAATCTTTCAAAAGGCAATGTCTGCATCCTGTTAG 1629 0.4309 MVSKLAGFYEHNTFSLMKIIILLNFILHKADSGCNNSVFTSIVSFPPYEILSSLQALPLEGQWSLRDNENAAKDFGNIFHFPPLAVLYPKTVADISLTIKHVFEMGSASELKVAARGHGHSLQGQAQVHGGIVINMESLQGHEMKVHRGEFPFVDVSGGELWINILHETLKHGLAPKSWTDYLHLTVGGTLSNAGISGQAFKHGPQISNTLQLEVVTGKGEVVTCSENRDADLFHGVLGGLGQFGIITRARISLEPAQKMVKWIRVLYSEFSTFTRDQEYLISLKDTFDYIEGFVIINSTGILNHWRSSFDPKDPLQASQFNSDGRTSYCLEMAKYFNPDEAEAMNQSVDHLLSQLSYIPPTLFLSEVSYVEFLDRVHVSENMLREKGLWEVPHPWLNLLIPRSEIHAFAEEVFGNILKDTSNGPILIYPVNQTRWNSKTSLVTPEEDVFYLVAFLSSAVPSSTGINSLEYILTQNKRILDFCTNAQLNVKQYLPHYSTQEEWQAHFGSRWEALVERKRVYDPLALLAPGHRIFQKAMSASC* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1331 542 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 83 118 IPR006093 GO:0016491
Lja1g1331 542 ProSiteProfiles PCMH-type FAD-binding domain profile. 79 257 IPR016166 GO:0071949
Lja1g1331 542 SUPERFAMILY FAD-linked oxidases, C-terminal domain 259 534 IPR016164 GO:0003824|GO:0050660
Lja1g1331 542 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 259 534 IPR015345 GO:0009690|GO:0019139|GO:0050660
Lja1g1331 542 PANTHER CYTOKININ OXIDASE/DEHYDROGENASE-LIKE PROTEIN 15 539 - -
Lja1g1331 542 Gene3D - 136 259 IPR016169 -
Lja1g1331 542 Pfam FAD binding domain 83 226 IPR006094 GO:0050660
Lja1g1331 542 Gene3D - 67 534 IPR016167 -
Lja1g1331 542 Gene3D - 260 493 IPR016170 -
Lja1g1331 542 SUPERFAMILY FAD-binding/transporter-associated domain-like 67 256 IPR036318 GO:0050660
Lja1g1331 542 PANTHER GULONOLACTONE OXIDASE 15 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1331 Lja-Chr1 13953251 13956315 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1331 K00279 - gmx:100777568 931.013