Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1329 ATGTCGCCGGCGGCGATACACCTCCAATCTCCGATCAAATCCTCCACCGACACAACCTCGCATCCCTCTTTCAATGCCGACGTCTTAAACCCTTCCACCGCCCGCGGGAGGTCGAGGCCCCGGCTCGTCAAGCTGAGGAAACAGTCGGCCAGGTCCAGGGGCAGAACAACCGCCGCCGGAGAAGAATCTTCCGCATCCTCCTCCGGCTTCAACCCTTTTCGCTCCGATCAGGTAACTGGTAGCTTTAGCAGAGCAGAGAGTGGCGATGGAGCTAACGATGGCGGTTGTGGTTCCGAGAACCCGAACCGTCATCGTGGCTTTGGGAGAGAGGGTTTTGTGTTTACTGCTAGGAACCGCGATTCTGGTTCTGCTAGGGATTTGAATTCCGAGCAGGGCTCGGGTGAGGAAGAATCGGAGTGTAGGAAAGGTGAGAGTGTGGAATTTGTGTTTTGTGCTAAACGGAGCGACGTGGAATCGGTTTCGCCTCGTGAGGGAGGGGAAAAGAGTAGTGAAAGGGAAGAACATGGGGAGTTTGATTCTGCAGGATTCGTTTTTAGTGCTGGTGGAAGCAATTTGGCTTCGAGTTCGAACGTAGAAATGGGGAAAACTAGTCTAGGTGTGGGGAATTCCGGACTTGTTGATGATGATGAGGAGAGGGGAAGTAAGGATGAAGTTGCAGGCGACAAGAATGGTAGCAGTAAAACGTCGAGTGTTAATATGAAACAGCAGGAGTCTGTTGATGGCCTGAGAAACTCGACCCATGGAGTTGGTGTTTTTAGTACCACGGTGGAAACAAATCCTAATTGTGATAAAGATGCTGATCAGTGTGATGATGATAAGTGTAAGAGTGCATTTGAAAGCATTTCTGCTATTTCTGCTCTTTATAGTGATGATATTCCTGCAGATAAGATAACAGATGAGATGAAGAAATTGAACATCAACCATTCTGAGGGTGTTGATACCACGAGAGATTCAATGAATTCATTTGTAAATAGTAGCGCTAGTTTTGTGTTTGGAGGAAGTGACAAGGTTTTTGGCTGTGTTAGTGATAGTTCAGGAGTTAATCTTGATGGTACTGATGCTGATTTGGATAATATTGGAGGGAAACATGTCAAAGCATGCAGAGAAAATGACGTTCAAAATGAAATTGGTTGCGGTTCTGCAGGAATACCTTGCACTGAGCCATCCACTAGTCAGGAAGGTGCCAGAGATTTCCAGGGTGGCAAAATTCCAGAATGTTGTGTGTCTGAAGAATCACAAGTGAATGGAGCTGCAGCACCATTTACCTGCTCGTCATGCGGTCTCGATTCCCATCCAAATTATGCTTCTATGGGCCATTCATCCAGTGCAGATAATGAGAAGTGCAATAATTGTTTTGCAAGTAGTGAAGAGGCATCCAAAGAGTCTTTTACGGACTTTAAACCCCCAACATGGGATCCTTCTTGTTTTAGAGAAAACTTGTTTCCAAAGTTAAATAAAAAGTTAGAATCGACACCAAAGAGCAGATTTTCTAAAGGAAAAGGATCAAAATGTTTGGGGCGAAAATTGAAGCCACATTCCTTGAATAAGAAACAGACAGATCATTTGTCAAAGGAAAGCAGTCCGCTCCAAACCCCTGGTTCTTCTGGTAGCCTCTCACCCATGGATTTTTCTCCTTATCAGGAAATAGCAGCAGATGATCAAGATGTAAAAGCTGCAGAAGAATTAAATGATCTGCACTCAAAAATTTCTACTGATAATAAAAAGGAACACCTGGAAACTCTAGGAAGAGAAGGTAATAATACAACTGCTCAAAGATGTGGAGATTTAGATAGTGGCAAGTCATCTAATGGAAGTTCTGCTGGTGGTGATGCTCAATATTCTGGGCCTGAAATGGTCTGGCCTAATATGAAAACTGAGCAGTTCAGCAGTAGCCGCACATGTGGTGCTTTGGCAGATGCTGGGTTTGACTTCACCTTAAACTCTGATAAACAAAAGCCTGGTGGACTTTGTTTTGTTCATGGTCCAAGTGATTCGAAGAAGAAAGATTTTACATTTTCCGCATCATCAACAGTAGAGGGTACTTCATCATCGTTTAAGCGTAAACAAAAGAAGAAATTTAGGAGGAAAGTAGGGTGTGACTCATTTGTTATCTCGCCCAACTTGAATGGGAAGTTTGCTTCTTCTGTACAATCTTCACCTCTTATCACTGCCAACATCTCATCACATTCTGATGTGATGGATAGGTCTCAAATAAATGACCAGTTCGAGGAAAGGGGTGGTGCTGGTGCATCGTCAGCTACAATTGAAGAAGCCTGTTACAAATGGAGACTTAGGGGGAACCATGCCCATAAAGATGGGGATCTTTCTAAAGCTGAGGCCTTCTATACACAAGGAATAAATTCTGTTCCGTCATGCGAAAGATCAGGATGCTGCCTTAAGCCTCTTTTACTGTGCTATAGTAACCGTGCAGCAACACGCATGAGCCTTGGAAGAATTAGAGAAGCTCTGGAGGATTGCATGATGGTTACTTCTCTGGACCCCACCTTTGTGAAAATACAGCTGAGAACCGCTAACTGTCACCTTTTGCTAGGGGAAATTGAAAATGCTCTGCAGTGTTATAATAAGTGCTTGGAATCGGGAAATGTTGTTTGTTTGGATCGGAGGGTTATAGTTGAAGCAGCTGAAGGTTTACAGAAGGCTCAGGAAGTGGTTAAGTGTATGAATGACGCTGCTGAGCGTTTGAAGGATAGGAACTCTAATGCAACTGGTTCTGCTTTAAAACTACTTACAAAGGCATTGTCTATAAGTTTATACTCAGAAAAGTTGCTCCAAATGAAGGCAGAAGCTTTATATTTGCTGCAAAAGTATGAAGATGCAATTCAGCTTTGTGAACAGAGTCAATGCCTTGCAGAAAAGAATCTTGCCTTGGCAAACAGTGCAAACAAATTGAATGGTTCCATGTTTGATAGTTACTCAAGTGTAAAATTGTGGAGGTGGTCATTGATATCCAAGTGTTACTTTCATTTGGGAAAGCTTGAGGCATCACTGAATGTTCTTGATAAATTACAGCAAGTAGCTACTGTCAATGACAAATGTTCGGTTGATAACGTGGAAGACTTGCTGTCATTAGCTGCCACAATACGAGAACTGCAAGCCCTCAAGAGTGCAGGAAATGAAAACTTTAAGTTGGGAAAGTATACGGAAGCAGTGGAGAATTACACTGTTGCTTTATCTAGTAATGTCAAATCACGTCCTTTCACAGCAATATGTTTCTGCAACCGTGCTGCTGCTTATCAAGCTTTGGGCCAAATTACTGATGCCATTGCAGACTGCAGCATGGCTATGGCCCTCAATGGAAATTATGCAAAGGCAATTTCAAGAAGAGCCTCATTACATGTAATGGTCAGAGATTACGAACAAGCAGCTTGTGACTTCAGGAGCCTTATATCTGTTCTTGAAACTCAATCCAATGAAAAGGCCAAACAGTCTAACTCTCCAAGTGGATCAAATGGTGGGAAAGAATCAAGGCAAGCTCATCAACGTCTGCTCTCAGTGGAAGAACAAGCCAAGAAGGGGACTGCCTTGGACTTTTACCTCATCTTAGGAATTAAACCAGATGATACAGCATCTGATATCAAGAAGGCATACCACAAGGCAGCTCTCAGACATCATCCAGATAAGGCTGGTCAGTTGTTGGCAAGAAGTGAAGTTGGAGATGAAGGCCGAGTGTGGAAGGAAATTTCACAGGAGGTTCACAAGGACGCGGATAGACTTTTCAAAATGATTGGAGAGGCATATGCTGTGCTTTCAGACCCTGCCAAGCGCTCGGAGTATGATCTAGATGAGGAGATAAGAAAAGCATCTGAGCAAGTTAATAGAGGTGGCACATGCAGGAGATCACCAGACGTTTTTAGGAATGGAAGACAATCTGAGGGTTATAAATCTCCCTTCGACAAAACTTATTACAGACGATATGGACAGGATCATTGGAGGACATATGGACAGTCATATTCTCGATGGTAA 4005 0.436 MSPAAIHLQSPIKSSTDTTSHPSFNADVLNPSTARGRSRPRLVKLRKQSARSRGRTTAAGEESSASSSGFNPFRSDQVTGSFSRAESGDGANDGGCGSENPNRHRGFGREGFVFTARNRDSGSARDLNSEQGSGEEESECRKGESVEFVFCAKRSDVESVSPREGGEKSSEREEHGEFDSAGFVFSAGGSNLASSSNVEMGKTSLGVGNSGLVDDDEERGSKDEVAGDKNGSSKTSSVNMKQQESVDGLRNSTHGVGVFSTTVETNPNCDKDADQCDDDKCKSAFESISAISALYSDDIPADKITDEMKKLNINHSEGVDTTRDSMNSFVNSSASFVFGGSDKVFGCVSDSSGVNLDGTDADLDNIGGKHVKACRENDVQNEIGCGSAGIPCTEPSTSQEGARDFQGGKIPECCVSEESQVNGAAAPFTCSSCGLDSHPNYASMGHSSSADNEKCNNCFASSEEASKESFTDFKPPTWDPSCFRENLFPKLNKKLESTPKSRFSKGKGSKCLGRKLKPHSLNKKQTDHLSKESSPLQTPGSSGSLSPMDFSPYQEIAADDQDVKAAEELNDLHSKISTDNKKEHLETLGREGNNTTAQRCGDLDSGKSSNGSSAGGDAQYSGPEMVWPNMKTEQFSSSRTCGALADAGFDFTLNSDKQKPGGLCFVHGPSDSKKKDFTFSASSTVEGTSSSFKRKQKKKFRRKVGCDSFVISPNLNGKFASSVQSSPLITANISSHSDVMDRSQINDQFEERGGAGASSATIEEACYKWRLRGNHAHKDGDLSKAEAFYTQGINSVPSCERSGCCLKPLLLCYSNRAATRMSLGRIREALEDCMMVTSLDPTFVKIQLRTANCHLLLGEIENALQCYNKCLESGNVVCLDRRVIVEAAEGLQKAQEVVKCMNDAAERLKDRNSNATGSALKLLTKALSISLYSEKLLQMKAEALYLLQKYEDAIQLCEQSQCLAEKNLALANSANKLNGSMFDSYSSVKLWRWSLISKCYFHLGKLEASLNVLDKLQQVATVNDKCSVDNVEDLLSLAATIRELQALKSAGNENFKLGKYTEAVENYTVALSSNVKSRPFTAICFCNRAAAYQALGQITDAIADCSMAMALNGNYAKAISRRASLHVMVRDYEQAACDFRSLISVLETQSNEKAKQSNSPSGSNGGKESRQAHQRLLSVEEQAKKGTALDFYLILGIKPDDTASDIKKAYHKAALRHHPDKAGQLLARSEVGDEGRVWKEISQEVHKDADRLFKMIGEAYAVLSDPAKRSEYDLDEEIRKASEQVNRGGTCRRSPDVFRNGRQSEGYKSPFDKTYYRRYGQDHWRTYGQSYSRW* 1335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1329 1334 Pfam DnaJ domain 1190 1273 IPR001623 -
Lja1g1329 1334 SUPERFAMILY TPR-like 1044 1144 IPR011990 GO:0005515
Lja1g1329 1334 MobiDBLite consensus disorder prediction 130 179 - -
Lja1g1329 1334 Gene3D Tetratricopeptide repeat domain 765 882 IPR011990 GO:0005515
Lja1g1329 1334 Gene3D Tetratricopeptide repeat domain 1042 1162 IPR011990 GO:0005515
Lja1g1329 1334 MobiDBLite consensus disorder prediction 187 204 - -
Lja1g1329 1334 MobiDBLite consensus disorder prediction 7 32 - -
Lja1g1329 1334 CDD DnaJ 1190 1265 IPR001623 -
Lja1g1329 1334 Gene3D DnaJ domain 1176 1292 IPR036869 -
Lja1g1329 1334 ProSitePatterns Nt-dnaJ domain signature. 1253 1272 IPR018253 -
Lja1g1329 1334 Coils Coil 891 911 - -
Lja1g1329 1334 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 1334 - -
Lja1g1329 1334 Gene3D Tetratricopeptide repeat domain 886 1036 IPR011990 GO:0005515
Lja1g1329 1334 ProSiteProfiles dnaJ domain profile. 1190 1276 IPR001623 -
Lja1g1329 1334 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 1334 - -
Lja1g1329 1334 MobiDBLite consensus disorder prediction 230 253 - -
Lja1g1329 1334 MobiDBLite consensus disorder prediction 531 549 - -
Lja1g1329 1334 MobiDBLite consensus disorder prediction 494 625 - -
Lja1g1329 1334 MobiDBLite consensus disorder prediction 1 253 - -
Lja1g1329 1334 SUPERFAMILY Chaperone J-domain 1138 1272 IPR036869 -
Lja1g1329 1334 SUPERFAMILY TPR-like 767 960 IPR011990 GO:0005515
Lja1g1329 1334 SMART dnaj_3 1189 1268 IPR001623 -
Lja1g1329 1334 SMART tpr_5 1044 1077 IPR019734 GO:0005515
Lja1g1329 1334 SMART tpr_5 766 799 IPR019734 GO:0005515
Lja1g1329 1334 SMART tpr_5 990 1023 IPR019734 GO:0005515
Lja1g1329 1334 SMART tpr_5 1082 1115 IPR019734 GO:0005515
Lja1g1329 1334 SMART tpr_5 934 967 IPR019734 GO:0005515
Lja1g1329 1334 SMART tpr_5 810 843 IPR019734 GO:0005515
Lja1g1329 1334 SMART tpr_5 844 877 IPR019734 GO:0005515
Lja1g1329 1334 SMART tpr_5 1116 1149 IPR019734 GO:0005515
Lja1g1329 1334 MobiDBLite consensus disorder prediction 1150 1171 - -
Lja1g1329 1334 PRINTS DnaJ domain signature 1192 1210 IPR001623 -
Lja1g1329 1334 PRINTS DnaJ domain signature 1248 1268 IPR001623 -
Lja1g1329 1334 PRINTS DnaJ domain signature 1210 1225 IPR001623 -
Lja1g1329 1334 MobiDBLite consensus disorder prediction 560 589 - -
Lja1g1329 1334 MobiDBLite consensus disorder prediction 1285 1307 - -
Lja1g1329 1334 MobiDBLite consensus disorder prediction 52 86 - -
Lja1g1329 1334 MobiDBLite consensus disorder prediction 590 617 - -
Lja1g1329 1334 MobiDBLite consensus disorder prediction 212 229 - -
Lja1g1329 1334 MobiDBLite consensus disorder prediction 1150 1173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1329 Lja-Chr1 13937733 13947135 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1329 K09527 - gmx:100809278 1454.11