Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1308 ATGGGAGAAGGAACTGCGTGGAGGCAGTTGAAGATCATGCTCAGGAAGAACTGGCTCCTCAAGATTCGTCACCCTTTCGCCACTGCCGCTGAGATTTTGCTTCCTACGGTTGTGTTGTTGCTATTAGTAGCTGTCAGGACACGAGTCGACACCCAAATTCATCCAGTTCAATCGCACATTCAAAAAGACATGTTTGTTGAAGTGGGAAAAGGTATATCCCCTAACTTCCAACAAGTTTTGGAATCCTTGCTCGATAAGGGAGAGTATTTAGCTTTTGCACCGGATACCGATGAGACAAAGCTGATGATAGATGTAGTGTCGATAAAATTTCCTCTCTTGAAGCTTGTTAGTAGAGTATACCAAGATGAGGTAGATTTGGAGACCTACATCCGTTCAGATGCTTATGGCACCTGCAATCAAGTAAGGAATTGTTCAAATCCCAAAATTAAAGGAGCAGTTGTATTTTACGAACAAGGTCCTCAGTCCTTTGATTATAGTATACGCCTCAATCATACATGGGCTTTCTCTGGTTTTCCAGATGTTACAACAATAATGGACACAAATGGACCTTTTCTTAATGACTTGGAACTTGGTGTCAGTGCTGTACCAACGATGCAATACAGCTTCAGTGGATTTTTCACTCTCCAGCAGATGGTCGATTCATTCATAATATTAATGGCTCAGCAGTCTGACATAAATTCCAGTGCTAAAGATGTAAAGCTCCCTCTACCAGGCTTCTATAATGCTGATTTCTCTTCAAAAATTCCATGGACTCAATATAACCCTGCTCACATACGAATAGCTCCATTTCCCACTCGGGAATACACTGATGACCAGTTCCAGTCAATCATAAAGGAAGTCATGGGAATATTGTACTTATTAGGGTTTCTCTATCCGATTTCCCGTCTGATAAGTTATTCTGTGTTTGAGAAGGAACAGAAAATTAAAGAAGGACTCTATATGATGGGCCTGAAAGATAGTGTATTTCATCTGTCTTGGTTTATTACATATGCTTTGCAGTTTGCTATTTCTTCTGGGGTCCTTACAGCTTGCACCATGGATAATTTATTCAAGTATAGTGATACGACACTGGTGTTTGTGTACTTTTTTGTTTTTGGGCTTAGTGCGATCATGCTGTCATTTTTTATATCAACATTTTTCAAACGGGCCAAAACAGCAGTAGCTGTTGGAACTCTGTCTTTTCTCGGTGCCTTTTTACCTTATTACAGTGTCAATGATGAGGGAGTTTCTATGATCTTGAAGGTTGTTGCTTCTTTGCTTTCACCTACGGCCTTTGCTCTGGGTTCGGTCAACTTTGCTGATTATGAGCGTGCTCATGTTGGACTTCGTTGGAGCAACATATGGCGGGAATCATCTGGAGTAAACTTCTCCGCATGTCTTCTGATGATGATACTTGATACGCTGCTATATTGTGTTATTGGACTGTATTTTGATAAGGTTCTTCCCAGGGAGTATGGACGGCGATATCCATGGAGTTTTATTTTCAAAAAGAACTTCTGGAGGAAGAAAGAAATTGTAAACCATTGTTCCTCCAGTTCCAAAGATAAAAATGTTGGTAACGATTCTGAGTCAGAAAGAGACCTTTTAGGGGATGATGCTTACAAACCTGCTATAGAAGCAATAAGCTTAGACATGAAACAACAGGAGCTTGATGGCAGGTGCATTCAAATCAGGAATTTGCATAAAATGTATGATACTAGAAAAGGAGATTGCTGTGCTGTTAACTCATTGCAGTTAACGTTGTATGAAAATCAGATTCTTGCTCTTTTAGGTCATAATGGAGCTGGGAAAAGCACAACAATCTCAATGCTTGTTGGTCTTGTTCCTCCTACTTCAGGGGATGCTTTGGTTTTTGGGAAGAACATCATATCAGATATAGATGAGATACGGAAGGTTTTGGGTGTCTGCCCACAACATGATATACTCTTTCCTGAATTGACTGTGAGAGAGCATTTAGAACTGTTTGCAGCATTAAAGGGTGTGGAGGTAGACTCATTGGAGGGTGTTGTTGCTAACATGGTTGATGAGGTGGGCTTGGCTGATAAAGTTAACAGTGTTGTGAGTTCTCTTTCTGGTGGCATGAAGAGGAAGTTATCTCTTGGGATTGCATTGATTGGAAACAGTAAGGTTATAGTTCTTGATGAACCTACAAGTGGAATGGATCCCTACTCAATGCGCTTGACTTGGCAGTTGATAAAAAAATTTAAGAAGGGTAGGATAATTTTGCTAACAACACATTCTATGGATGAAGCGGATGAACTAGGGGATCGGATAGCTATCATGGCCAATGGTTCTCTGAAATGCTGTGGAAGCTCCCTTTTCTTGAAGCATCACTATGGAGTTGGTTATACTCTTACTCTTGTGAAGTCAGCTCCTACTGCTTCTATAGCTGGTGATATAGTGTACCGTCATGTTCCTTCTGCAACCTGTATAAGCGAGGTCGGAACTGAGATTTCCTTCAGGCTTCCTTTGGCATCCTCATCAGCCTTTGAAAGGATGTTTAGGGAAATCGAAAGTTGCATGAAAATCCCAGTTTTAGACTTGGAAGTAAGTGGCAGTGGTGACAAAGACAGTCATGGTATTGAAAGCTATGGTATATCTGTTACAACTCTGGAGGAGGTATTCTTGAGAGTTGCAGGATCTGACTATGATGAAGTTGAATCCTTTAAAGTAAATATCCGATCCCATATATCAGATTCTGTGCCTTCTCTTCCTTTTAGTGATCGTCCATCCACAAAAATATGTGACCTTAAAGTTGTTGGAAATTATAAGAAGATTCTTGGTTTCGTGTCTACAATGGTTGGAAGAGCTTTTAATTTAATTTTTGCTACGGTTATTAGTTTCATCAACTTTGTGAGTATGCAGTGTTGTGGCTGTTGTCTCATTACTAGGTCTACATTCTGGAAACATTCTAAAGCTTTATTCATTAAAAGGGCAATATCTGCTCGGAGAGATCACAAAACGCTTGTTTTCCAGTTACTGATTCCTGCTGTCTTCTTGTTTATTGGTCTTCTATTTCTTGAGCTCAAGCCACATCCTGATCAACAGTCACTGATCCTTTCAACTTCTTATTTTAATCCTCTACTGAGCGGTGGGGGTGGGGGAGGTCCAATTCCATTTAATCTATCTTTGCCAATTGCTGAAAAGGTTGCAAAAAGTGTCGAAGGAGGGTGGATTCAAATGTGCAAGCCAAGCTCTTATAAATTCCCAAATTCAGAGAAGGCATTATCTGATGCAGTGGAAGCAGCTGGGCCAACACTGGGACCTGCTCTACTTTCAATGAGTGAATATTTGATGTCTAGCTTTAATGAATCCTACCAATCTAGGTATGGAGCAATTGTAATGGATGATCAGAATAATGATGGAAGCTTAGGCTACACTGTATTGCACAACTTTTCTTGTCAACATGCGGCTCCCACCTTTATCAATTTGATGAATTCTGCAATTCTGAGGCTTGCTACTCATAATACGAATATGACAATTCAGACACGCAACCACCCTCTTCCAATGACCAAAAGCCAGCACTTACAACGTCATGATCTGGATGCCTTCTCTGCTGCTGTCATTGTCAATATTGCCTTCTCTTTTATACCTGCCTCCTTTGCTGTTTCAATTGTTAAGGAACGTGAAGTGAAAGCTAAGCACCAACAACTAATCAGTGGGGTTTCAGTCTTTTCATATTGGGCTTCTACATTTATGTGGGACTTCGTGAGCTTCTTGTTTCCAGCCTCGTTTGCCATAATTCTCTTTTACATCTTTGGTCTGGATCAGTTTGTTGGAGGGGTTTCTTTGTTACCGACGATCCTCATGCTTTTGGAATATGGACTTGCAATTGCGTCGTCAACTTATTGCCTTACATTTTTCTTTTTTGACCATATGGTGGCTCAGAACGTGGTTCTCCTGGTCCACTTCTTTACTGGATTGATACTAATGGTTATCTCATTCGTTATGGGACTCATCCCATCCACAATAAGTTTCAATTCTTTTCTTAAGAATTTTTTCAGAATATCACCTGGGTTTTGTTTTGCTGATGGTCTTGCTTCATTAGCTCTTCTGCGGCAAGGAATGAAAGATAAAACAAGTGATGGAGTGTTTGATTGGAATGTAACTGGTGCCTCCATTTGTTATCTTGCTGTTGAGAGCTTTGGTTACTTTTTGTTGACACTCGCACTTGAAATTTTTCCTTCTCCCAAATTGACTTCATTCATGATCAAGAATTGGTGGGGGAAGATTAATATATTTCAGCAAAATGCTACTTATCTGGAACCCCTTTTAGAACCTTCCTCAGAAACTGTTGTGATGGACTTCGAGGAAGATGTAGATGTGAAAACAGAAAGAAATAGGGTACTTTCAGGTTCCCTTGACAATTCCATTATCTACTTGCGCAATCTTCGGAAGGTATACTCCGAAGAGAAGTATCATGGGAAAAAGGTTGCAGTAGATTCATTAACCTTCTCAGTTCAGGAAGGAGAATGTTTTGGCTTTTTAGGGACAAATGGAGCTGGAAAGACTACAACTCTTTCTATGCTATGTGGGGAGGAAACTCCTTCTGATGGGACTGCTTTTATTTTTGGCAAAGATATATGCTCCCATCCCAAGGCTGCTCGTCAATATATTGGATATTGTCCACAATTCGATGCCCTATTGGAGTTCTTAACTGTCCAAGAGCATCTTGAGCTTTATGCTAGAATAAAAGGTGTTCCAGACTACACATTAGAAAATGTTGTTAATGAAAAGATGGTGCAGTTTGACTTATTGAAGCATGCTAATAAACCATCATTTTCACTTAGTGGAGGGAATAAAAGGAAACTGTCGGTTGCTATTGCAATGATTGGAGATCCTCCTATTGTCATTCTTGATGAGCCATCCACAGGTATGGATCCCATTGCCAAAAGGTTCATGTGGGATGTAATATCTAGGATCTCAACGAGAAGAGGAAAGACTGCAGTGATTCTTACTACCCACAGCATGAATGAAGCCCAAGCCTTATGTACCAGAATTGGGATTATGGTCGGTGGACGACTGAGATGCATTGGAAGTCCACAACATCTAAAATCAAGATTTGGAAATTATCTAGAACTAGAGGTAAAACCTACTGAAGTGAGCTCTGCTGACTTACAATCACTCTGCCAAGCCATTCAGGAAATGCTTTTGGATATCCCTTCTCAACCTAGAAGCTTACTTAATGACCTTGAAATATGCATTGGGGGAACTGACTCCACCACAGGAAATACCTCTGTTGCGGAGATTAGCTTGACAAGAGAAATGATAGGTTTAATTGGACGCTGGCTTGGCAATGAAGAGAGAGTGAAGACTCTAATTACTTGTGCACCAGTCTATGATGGAGCTTCTCAGGAACAGTTATCAGAACAATTATTTCGAGATGGTGGTATTCCATTGCCAGTATTTTCTGAGTGGTGGTTATCCAAACAAAAATTCTCAGAAATTGATTCATTTATTCTGGCTTCATTTCGTGGAGCTAGATGCCAAGGGTGCAATGGTTTGAGTATTAGATACCAGTTACCATATGATGAAGATTTTTCCCTGGCAGATGTTTTTGGACTTCTTGAAGGAAACAGAAATAGATTAGAGATTGCAGAGTACAGCATCAGCCAATCAACTCTTGAGACGATATTTAATCATTTTGCAGCTAATTCATGA 5682 0.4029 MGEGTAWRQLKIMLRKNWLLKIRHPFATAAEILLPTVVLLLLVAVRTRVDTQIHPVQSHIQKDMFVEVGKGISPNFQQVLESLLDKGEYLAFAPDTDETKLMIDVVSIKFPLLKLVSRVYQDEVDLETYIRSDAYGTCNQVRNCSNPKIKGAVVFYEQGPQSFDYSIRLNHTWAFSGFPDVTTIMDTNGPFLNDLELGVSAVPTMQYSFSGFFTLQQMVDSFIILMAQQSDINSSAKDVKLPLPGFYNADFSSKIPWTQYNPAHIRIAPFPTREYTDDQFQSIIKEVMGILYLLGFLYPISRLISYSVFEKEQKIKEGLYMMGLKDSVFHLSWFITYALQFAISSGVLTACTMDNLFKYSDTTLVFVYFFVFGLSAIMLSFFISTFFKRAKTAVAVGTLSFLGAFLPYYSVNDEGVSMILKVVASLLSPTAFALGSVNFADYERAHVGLRWSNIWRESSGVNFSACLLMMILDTLLYCVIGLYFDKVLPREYGRRYPWSFIFKKNFWRKKEIVNHCSSSSKDKNVGNDSESERDLLGDDAYKPAIEAISLDMKQQELDGRCIQIRNLHKMYDTRKGDCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLVPPTSGDALVFGKNIISDIDEIRKVLGVCPQHDILFPELTVREHLELFAALKGVEVDSLEGVVANMVDEVGLADKVNSVVSSLSGGMKRKLSLGIALIGNSKVIVLDEPTSGMDPYSMRLTWQLIKKFKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTASIAGDIVYRHVPSATCISEVGTEISFRLPLASSSAFERMFREIESCMKIPVLDLEVSGSGDKDSHGIESYGISVTTLEEVFLRVAGSDYDEVESFKVNIRSHISDSVPSLPFSDRPSTKICDLKVVGNYKKILGFVSTMVGRAFNLIFATVISFINFVSMQCCGCCLITRSTFWKHSKALFIKRAISARRDHKTLVFQLLIPAVFLFIGLLFLELKPHPDQQSLILSTSYFNPLLSGGGGGGPIPFNLSLPIAEKVAKSVEGGWIQMCKPSSYKFPNSEKALSDAVEAAGPTLGPALLSMSEYLMSSFNESYQSRYGAIVMDDQNNDGSLGYTVLHNFSCQHAAPTFINLMNSAILRLATHNTNMTIQTRNHPLPMTKSQHLQRHDLDAFSAAVIVNIAFSFIPASFAVSIVKEREVKAKHQQLISGVSVFSYWASTFMWDFVSFLFPASFAIILFYIFGLDQFVGGVSLLPTILMLLEYGLAIASSTYCLTFFFFDHMVAQNVVLLVHFFTGLILMVISFVMGLIPSTISFNSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTGASICYLAVESFGYFLLTLALEIFPSPKLTSFMIKNWWGKINIFQQNATYLEPLLEPSSETVVMDFEEDVDVKTERNRVLSGSLDNSIIYLRNLRKVYSEEKYHGKKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEETPSDGTAFIFGKDICSHPKAARQYIGYCPQFDALLEFLTVQEHLELYARIKGVPDYTLENVVNEKMVQFDLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKSRFGNYLELEVKPTEVSSADLQSLCQAIQEMLLDIPSQPRSLLNDLEICIGGTDSTTGNTSVAEISLTREMIGLIGRWLGNEERVKTLITCAPVYDGASQEQLSEQLFRDGGIPLPVFSEWWLSKQKFSEIDSFILASFRGARCQGCNGLSIRYQLPYDEDFSLADVFGLLEGNRNRLEIAEYSISQSTLETIFNHFAANS* 1894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1308 1893 CDD ABC_subfamily_A 562 783 - -
Lja1g1308 1893 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1466 1704 IPR003439 GO:0005524
Lja1g1308 1893 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1316 1667 IPR026082 GO:0016021|GO:0055085|GO:0140359
Lja1g1308 1893 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 7 1320 IPR026082 GO:0016021|GO:0055085|GO:0140359
Lja1g1308 1893 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1656 1890 IPR026082 GO:0016021|GO:0055085|GO:0140359
Lja1g1308 1893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 559 800 IPR027417 -
Lja1g1308 1893 Gene3D - 1458 1706 IPR027417 -
Lja1g1308 1893 Gene3D - 549 798 IPR027417 -
Lja1g1308 1893 ProSitePatterns ABC transporters family signature. 697 711 IPR017871 GO:0005524
Lja1g1308 1893 ProSitePatterns ABC transporters family signature. 1603 1617 IPR017871 GO:0005524
Lja1g1308 1893 Pfam ABC transporter 1488 1630 IPR003439 GO:0005524
Lja1g1308 1893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1461 1699 IPR027417 -
Lja1g1308 1893 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 562 795 IPR003439 GO:0005524
Lja1g1308 1893 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 1316 1667 - -
Lja1g1308 1893 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 1656 1890 - -
Lja1g1308 1893 Pfam ABC transporter 582 725 IPR003439 GO:0005524
Lja1g1308 1893 SMART AAA_5 590 772 IPR003593 -
Lja1g1308 1893 SMART AAA_5 1496 1683 IPR003593 -
Lja1g1308 1893 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 7 1320 - -
Lja1g1308 1893 Pfam ABC-2 family transporter protein 243 483 - -
Lja1g1308 1893 Pfam ABC-2 family transporter protein 994 1396 - -
Lja1g1308 1893 CDD ABC_subfamily_A 1466 1692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1308 Lja-Chr1 13648559 13682057 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1308 541 798 Calmodulin-binding Proteins AT2G36910 26.316 1.60e-17 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1308 K05643 - gmx:100803263 3349.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1308 1 13648559 13682057 Lja1g1308 1 13648559 13682057 ECH