Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1306 ATGGCCACCACCGCGCCTCACTGTGTCCAACTCGCCGGCGCCACCGTGTCAACTCGTCCGCGAAGCGCCACCGCCATCTCCTGCAAGAAGAAGGCGAACGAGTTGGCATTCAAGGAGACCAAAGATGGCTTCGTGGACTACGACAGAGGCCAGCACGAGGTCTCTGCCAGAGTCACCGGCCTCCGCAAGGACGACATCCCCGCCCACTACCGCCTCCGTGTCGCCGGAAACCGCTTCCAGATGGACTGGACTGTGTCTGAGGTCGCCGAACAAGTCCTCTCCCTCACCCTCTATGATGACATCGACGGCCTTCTCAACCGCTGGGTTGGACGCTTCGCTCGCAAGAATTTCCCGTTCCTCATCAAGGAATTGACACAGAGAGGGTCAATTGAACACTGTAACCTAGTGTTCCAGTGGATGAAGAACCAGAGGAATTACTGTGCCAGGAATGATATATACAACATGATGATTAGGTTGCATGCTAGGCACAATCGAATCGACCAGGCACGAGGGTTGTTTTTCGAGATGCAGGAATGGAGGTGCAAACCTGATGCGGAGACTTACAATGCACTTATCAATGCGCATGGTAGAGCTGGACAATGGCGTTGGGCCATGAATATCATGGACGACATGCTGCGTGCCGCTATTCCACCAAGTCGGTCAACTTATAACAACTTGATAAATGCCTGTGGATCTAGTGGAAATTGGAAAGAAGCACTTAATGTTTGCAAGAAAATGACTGACAATGGAGTCGGGCCCGATCTCGTCACTCACAATATTCTGTTATCTGCATTTAAAAGTGGTTCTCAGTATTCAAAAGCTTTGTCATATTTTGAACTAATGAAGGGAACTCACATTCGTCCTGACACAACAACACTTAATATTGTAATCCACTGTCTAGTGAAGCTTCGACAATATGACAAAGCCATAGACATTTTTAATTCTATGAGGGAAAAGAAGTCAGAATGCCACCCTGATGTTGTATCATACACTAGTATCATTCACTTATATTCTGTGAGCGGTCAGATTGAAAATTGTGAGGCTGCATTCAATATGATGCTTGCCGAAGGGATCAAACCAAGTATAGTTTCATATAATGCACTAGTGGGTGCATATGCTGCACATGGGATGGGAAAGGAAGCACTTCTAGTTTTTAATGAGATAAAACAAAATGGTTTCCGCCCTGATATTGTATCTTATACATCTCTGCTGAATGCTTATGGAAGATCACAAAAGCCACAAAAAGCAAGGGGAGTATTTGAAATGATAAAGAGAAACAAGTTGAAGCCCAACCTTGTCAGTTACAATGCACTGATTGATGCCTATGGATCTAATGGTTTGCTGGATGATGCAATTAAAATCTTGCGAGAAATGGAACAAGATGGTATTCAGCCAAATGTTGTCTCAATATGCACACTCTTGGCTGCCTGTGGACGATGCAGTCAGAAGGGGAAGATTGAAACTGTGCTATCAGCAGCTCAGATGCGAGGCATTAAACTTAACACAGTTGCATATAATTCAGCTATAGGAAGCTATCTTAATGTGGGGGAGTATGACAAAGCTTTAGGCTTGTATAAATCAATGAGAAAGAAAAAAATTAAAGCTGATTCTGTTACATACACTATCTTGATAAGTGGTTCCTGTAAGATGTCAAAATATGGTGAAGCTCTGTCTTTTATGGAAGAAATGATGCATCTAAAACTTCCTGTGTCCAAAGAGGTCTACTCATCTATCTTATGTGCCTATAGCAAACAGGGCCAAATTGTAGAAGCAGAATCTACATTCAACTTGATGAAATCATCTGGTTGTAGTCCAGATGTGGTTACATATACTTCCATGCTTGACGCCTACACTGCAGCTGAGAATTGGGAGAAAGCGTATGCACTCTTTAATGAAATGGAGGCAAATGACATCAAGCTAGATACTGTTGCATGTGCAGCTCTAATGAGAGCTTTCAATAGAGGAGGCCAGCCAGGGAGGGTCCTTAATCTGGCAGAAAGTATGAGAGAAAAAGATATTCCTTTAAGTGATACTATATTTTTTGAAATGGTATCTGCCTGTAGCTTATTACAAGATTGGAAGACAGCTTTTGATATGATCAAGTACATAGAGCCCTCGCTTCCGGTAATTTCATCTGGATGTTTGAATCTGCTCCTGCATTCTTTAGGAAAGAGCGGAAGGATTGAAACTATGTTGAAGTTATTCTTGAAAATGTTGGCATCGGGGGCTGATGTTAACTTCAATACTTATTCTATTTTACTGAAGAATGTTTTGTCCTCTGGAAATTGGAGGAAATATTTAGAGGTACTGCAGTGGATGGAAGATGCAGGAATTCATCCATCAAATGAAATGTACCATGATATATCCTCCTTTTCGCAAAAATGCTGTGGGGCTGAAAATGCTGCCGTCATAAAAGAAAGACTTGAATCCTTGAAAAGAAAATCCAAGGATCAAGTTTCTGCTAGCCAACCATGTGAATCTCCTGTTCTTAGCTGA 2496 0.4295 MATTAPHCVQLAGATVSTRPRSATAISCKKKANELAFKETKDGFVDYDRGQHEVSARVTGLRKDDIPAHYRLRVAGNRFQMDWTVSEVAEQVLSLTLYDDIDGLLNRWVGRFARKNFPFLIKELTQRGSIEHCNLVFQWMKNQRNYCARNDIYNMMIRLHARHNRIDQARGLFFEMQEWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNILLSAFKSGSQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIDIFNSMREKKSECHPDVVSYTSIIHLYSVSGQIENCEAAFNMMLAEGIKPSIVSYNALVGAYAAHGMGKEALLVFNEIKQNGFRPDIVSYTSLLNAYGRSQKPQKARGVFEMIKRNKLKPNLVSYNALIDAYGSNGLLDDAIKILREMEQDGIQPNVVSICTLLAACGRCSQKGKIETVLSAAQMRGIKLNTVAYNSAIGSYLNVGEYDKALGLYKSMRKKKIKADSVTYTILISGSCKMSKYGEALSFMEEMMHLKLPVSKEVYSSILCAYSKQGQIVEAESTFNLMKSSGCSPDVVTYTSMLDAYTAAENWEKAYALFNEMEANDIKLDTVACAALMRAFNRGGQPGRVLNLAESMREKDIPLSDTIFFEMVSACSLLQDWKTAFDMIKYIEPSLPVISSGCLNLLLHSLGKSGRIETMLKLFLKMLASGADVNFNTYSILLKNVLSSGNWRKYLEVLQWMEDAGIHPSNEMYHDISSFSQKCCGAENAAVIKERLESLKRKSKDQVSASQPCESPVLS* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1306 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
Lja1g1306 831 Gene3D Tetratricopeptide repeat domain 390 459 IPR011990 GO:0005515
Lja1g1306 831 Gene3D Tetratricopeptide repeat domain 247 318 IPR011990 GO:0005515
Lja1g1306 831 Gene3D Tetratricopeptide repeat domain 319 389 IPR011990 GO:0005515
Lja1g1306 831 Gene3D Tetratricopeptide repeat domain 86 246 IPR011990 GO:0005515
Lja1g1306 831 Gene3D Tetratricopeptide repeat domain 460 566 IPR011990 GO:0005515
Lja1g1306 831 Gene3D Tetratricopeptide repeat domain 567 639 IPR011990 GO:0005515
Lja1g1306 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Lja1g1306 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 711 745 IPR002885 -
Lja1g1306 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Lja1g1306 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 641 675 IPR002885 -
Lja1g1306 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 746 780 IPR002885 -
Lja1g1306 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Lja1g1306 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Lja1g1306 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Lja1g1306 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Lja1g1306 831 SUPERFAMILY TPR-like 289 665 IPR011990 GO:0005515
Lja1g1306 831 TIGRFAM PPR: pentatricopeptide repeat domain 328 361 IPR002885 -
Lja1g1306 831 TIGRFAM PPR: pentatricopeptide repeat domain 292 321 IPR002885 -
Lja1g1306 831 TIGRFAM PPR: pentatricopeptide repeat domain 256 290 IPR002885 -
Lja1g1306 831 TIGRFAM PPR: pentatricopeptide repeat domain 538 568 IPR002885 -
Lja1g1306 831 TIGRFAM PPR: pentatricopeptide repeat domain 152 185 IPR002885 -
Lja1g1306 831 TIGRFAM PPR: pentatricopeptide repeat domain 716 742 IPR002885 -
Lja1g1306 831 TIGRFAM PPR: pentatricopeptide repeat domain 574 607 IPR002885 -
Lja1g1306 831 TIGRFAM PPR: pentatricopeptide repeat domain 608 642 IPR002885 -
Lja1g1306 831 TIGRFAM PPR: pentatricopeptide repeat domain 503 536 IPR002885 -
Lja1g1306 831 TIGRFAM PPR: pentatricopeptide repeat domain 222 254 IPR002885 -
Lja1g1306 831 TIGRFAM PPR: pentatricopeptide repeat domain 398 431 IPR002885 -
Lja1g1306 831 TIGRFAM PPR: pentatricopeptide repeat domain 187 219 IPR002885 -
Lja1g1306 831 TIGRFAM PPR: pentatricopeptide repeat domain 433 467 IPR002885 -
Lja1g1306 831 TIGRFAM PPR: pentatricopeptide repeat domain 363 397 IPR002885 -
Lja1g1306 831 Pfam PPR repeat family 152 194 IPR002885 -
Lja1g1306 831 Pfam PPR repeat family 220 265 IPR002885 -
Lja1g1306 831 Pfam PPR repeat family 574 617 IPR002885 -
Lja1g1306 831 Pfam PPR repeat family 501 549 IPR002885 -
Lja1g1306 831 Pfam Pentatricopeptide repeat domain 629 673 IPR002885 -
Lja1g1306 831 Pfam Pentatricopeptide repeat domain 448 478 IPR002885 -
Lja1g1306 831 Pfam Pentatricopeptide repeat domain 734 782 IPR002885 -
Lja1g1306 831 Pfam Pentatricopeptide repeat domain 324 372 IPR002885 -
Lja1g1306 831 Pfam Pentatricopeptide repeat domain 384 445 IPR002885 -
Lja1g1306 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Lja1g1306 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Lja1g1306 831 PANTHER OS07G0213300 PROTEIN 25 789 - -
Lja1g1306 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Lja1g1306 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Lja1g1306 831 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 25 789 - -
Lja1g1306 831 SUPERFAMILY TPR-like 183 315 IPR011990 GO:0005515
Lja1g1306 831 Gene3D Tetratricopeptide repeat domain 655 827 IPR011990 GO:0005515
Lja1g1306 831 Pfam PPR repeat 292 319 IPR002885 -
Lja1g1306 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
Lja1g1306 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1306 326 794 Glycosyltransferase AT1G05670 25.265 4.46e-38 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1306 - - gmx:100814643 1475.69