Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1277 ATGCACGATCCTCCAATCCCCCTCCCACAACTACAACCTCTGCAACTCTCCCTCTCAGGGAACTACCGCACCATCTGCAACCACCTCCTCGCTCTAACCCACTCTCGATCCCTCCGCAGAGGCCTCCAACTCCATGCCCACATCATCAAAACCGGCCTCGAAACCATCCCTCTCCTCTCCCACCACCTCATCAACTTCTACTCCAAAACTCAACTCCCCAACTCCTCCCTCCAAGTCTTCAACTCCTCCCCTCACCGCTCCGCCACCACCTGGAGCTCCCTCATCTCCTCCTTCGCCCAGAACGACCTCCCCCATCTCGCCCTCGACTTCTTCCGCCAAATGCTCCGCATTGGACTCCTCCCTGATGATCACATTCTCCCCACCGCCGCCAAGTCCTGCGCCGCGCTCTCATCCATCCACGTCGGCCTATCCCTCCATGCCCTCGCCCTTAAAACCGCATACCACCTCGACGTATTCGTTGCCAGCTCGCTTGTTGATATGTATGCGAAATGCGGGGAAATCGGGTATGCCCGGAACGTGTTTGATGAAATGCCCCACAGAAATGTGGTGTCGTGGAGCGGGATGATATATGGGTATGTTCAATTGGGTGAGGATGAGGAGGCTCTGAGGCTGTTTAAGCAGGTGCTCGTGGAGGAAGACGTCGGGGTTAATGATTTCACATTGTCTAGTGTTTTGAGGGTGTGCGGTGCTTCCACGTTGCTCGAGCTCGGGAAGCAGATACACGGGTGGTGTTTCAAGACGAGCTTTGACTCGTCGTGTTTCGTGGCTAGTTCTTTGATTTCGTTGTACTCCAAGTGCGGGGCTGTTGAAGGAGCTTACCAGGCTTTTGAGGAGCTGCAAGTTAGGAATCTTGGGATGTGGAATGCGATGTTGATTGCGTGCGCTCAGCACGCGCATACGAATAGAACCTTTGAGCTGTTTGAGCAGATGAAGAGTGTTGGCGGGGTGAAGCCTAATTTCATCACGTTTTTGTGCGTGCTTTATGCTTGCAGCCATGCAGGGTTAGTGGAGAAAGGCCAGCATTACTTTGAGTTGATGAAGAAGGACTATGGTATTGAACCCGGGTCACAACATTACGCCACCATGGTGGATTTGCTTGGCCGTGCTGGGAAATTGCAGGATGCGGTTCAGGTGATCGAGGAAATGCCTATGGAACCCACAGAATCTGTTTGGGGGGCTTTGTTGACAGGGTGTAGAATACATGGGGATACTGAACTTGCATCCTATGTTGCTGATAGAGTTTTTGAGCAGGGTCATGTGAGTTCTGGCCTTAATGTCCTGCTTTCTAATGCTTATGCTGCTGCTGGGAGATGGGAGGAAGCAGCAAGAGCAAGAAAGATGTTGAGAGACCAAGGAATAAAGAAGGAAACTGGTTTGAGTTGGGTGGAGGAAGGGAATAGAGTTCACACATTTGCTGCTGGGGACAGGTCTCATGCGAAAACAGTGGAAATTTATAACAAGTTAGAGGAGTTAGGAGATGAAATGGCCAAAGCTGGTTATGTTGCAGACACTTCGTTTGTGTTGAAAGAAGTGGGTGGCGAAGAGAAGAATCAAACCATTAGGTATCATAGTGAGAGGTTAGCCATAGCATTTGGCCTCATTACTTTCCCTCAGGAACGACCAATCAGAGTGATGAAGAATTTGCGTGTTTGTGGTGATTGCCACACTGCGATTAAGTTTATTAGCAAAATTACTGGAAGGGTACTCATTGTGAGAGACAATAACCGGTTCCACCGATTTGAGGATGGAAAATGCACTTGTGGAGATTATTGGTGA 1797 0.5031 MHDPPIPLPQLQPLQLSLSGNYRTICNHLLALTHSRSLRRGLQLHAHIIKTGLETIPLLSHHLINFYSKTQLPNSSLQVFNSSPHRSATTWSSLISSFAQNDLPHLALDFFRQMLRIGLLPDDHILPTAAKSCAALSSIHVGLSLHALALKTAYHLDVFVASSLVDMYAKCGEIGYARNVFDEMPHRNVVSWSGMIYGYVQLGEDEEALRLFKQVLVEEDVGVNDFTLSSVLRVCGASTLLELGKQIHGWCFKTSFDSSCFVASSLISLYSKCGAVEGAYQAFEELQVRNLGMWNAMLIACAQHAHTNRTFELFEQMKSVGGVKPNFITFLCVLYACSHAGLVEKGQHYFELMKKDYGIEPGSQHYATMVDLLGRAGKLQDAVQVIEEMPMEPTESVWGALLTGCRIHGDTELASYVADRVFEQGHVSSGLNVLLSNAYAAAGRWEEAARARKMLRDQGIKKETGLSWVEEGNRVHTFAAGDRSHAKTVEIYNKLEELGDEMAKAGYVADTSFVLKEVGGEEKNQTIRYHSERLAIAFGLITFPQERPIRVMKNLRVCGDCHTAIKFISKITGRVLIVRDNNRFHRFEDGKCTCGDYW* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1277 598 Pfam E+ motif 475 502 IPR046849 -
Lja1g1277 598 Pfam Pentatricopeptide repeat domain 290 337 IPR002885 -
Lja1g1277 598 Pfam PPR repeat 190 214 IPR002885 -
Lja1g1277 598 Pfam PPR repeat 90 119 IPR002885 -
Lja1g1277 598 Pfam PPR repeat 366 390 IPR002885 -
Lja1g1277 598 Pfam PPR repeat 162 188 IPR002885 -
Lja1g1277 598 Pfam E motif 408 470 IPR046848 -
Lja1g1277 598 PANTHER OS01G0913400 PROTEIN-RELATED 19 541 - -
Lja1g1277 598 TIGRFAM PPR: pentatricopeptide repeat domain 293 326 IPR002885 -
Lja1g1277 598 TIGRFAM PPR: pentatricopeptide repeat domain 190 215 IPR002885 -
Lja1g1277 598 TIGRFAM PPR: pentatricopeptide repeat domain 366 389 IPR002885 -
Lja1g1277 598 TIGRFAM PPR: pentatricopeptide repeat domain 90 122 IPR002885 -
Lja1g1277 598 Gene3D Tetratricopeptide repeat domain 142 243 IPR011990 GO:0005515
Lja1g1277 598 Pfam DYW family of nucleic acid deaminases 506 598 IPR032867 GO:0008270
Lja1g1277 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Lja1g1277 598 PANTHER BNAA10G28390D PROTEIN 19 541 - -
Lja1g1277 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
Lja1g1277 598 Gene3D Tetratricopeptide repeat domain 19 141 IPR011990 GO:0005515
Lja1g1277 598 Gene3D Tetratricopeptide repeat domain 261 496 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1277 Lja-Chr1 13167560 13169572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1277 14 598 Glycoside Hydrolase AT3G49170 36.348 5.24e-130 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1277 - - lang:109356914 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1277 1 13167560 13169572 Lja1g1277 1 13167560 13169572 ECH