Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1255 ATGTTAATGGAAGAACACAAGCTACCACTCCTCTTCCAAATCACTTTCTCCTTTTTCCTTCTCACCCAATCACTCCTCGCCACGTCACACCCACCATACCCCATCCCATTAACCGTCTCCGTCTCCGACTTCGGAGCCGCCGGCGACGGCGTCCGCTACGACACAACATCAATCCAGTCCGCCATCAACTCCTGCCCGGGCAGCTCCCCCTGCCGCGTCATCTTCCCGGCGCCGGGAAAGTACCTGACGGCGACCGTGTTTCTGAAATCCGGCGTGGTCCTGTTTGTGGAGCCCGGAGCAACCATCCTGGGCGGTCCGAGGCTGGAGGACTACCCGAGGGAGCCGTCGCGGTGGTACGTGGTGCTGGCGGAGAACGCGACGGATGTGGGGATTGATGGCGGCGGGGTGGTGGATGGGCAGGCGGAGAAGTTCGTGGTGAGGGAGGATCCGAGGAAGAACATCATGGTGAGCTGGAATCAAACTGGAGTTTGTTCGGGTGACGAATGCAGACCAAGGCTCGTCGGTTTCCTCGGTTGCAGAAACGTTAGAGTCTCCAACATTACCCTTAACCAACCTGCTTATTGGTGCTTACACTTGGTACGGAGTGAGAACATATCCATTGAGGACATTGCAATTTATGGGGACTTCAACATACCAAACAATGATGGGATTGACATTGAGGACTCAAACAACACGGTAATCACTCGATGCCACATTGATACAGGGGATGATGCAATCTGTCCAAAGTCATATACAGGCCCTGTTTACAACCTCACTGTCACCAACTGTTGGATTCGGTCCAAATCTTCTGCAATTAAATTTGGCAGTGCTAGTTGGTTTGATTTCAAGCATTTCGTGTTTGATAATATCACTATTGTTGATTCTCACAGAGGTCTTGCATTCCAGATCCGTGATGGAGGAAATGTAAGTGGCATAGTCTTCTCCAACATAAATATCAGCACTAGATACTATGATCCATTATGGTGGGGGAGAGCGGAGCCTATCTACGTGACTACTTGCCCGCGACACTCAACCTCAAAGGAGGCTTCAATCTCAGATGTTCTTTTCATTAACATCACAGCAAATTCTGAAAATGGCATCTTCCTGGCTGGTTCCAAGAGAGGACTGTTAAGGAACTTGAGATTCGTCAACATGAACATCACTTACAGAAGGTTCACCAGTTATGCTGGTGGCTTATTGGACTATAGGCCAGGATGCCAAGAATTGGTTAAACACAGGACTGCAGGCATGATGATGGAACACATTGAAGGTCTTGAAGTTAAAAATGTAGAAATGAGATGGTCAAATTCAAACAATCAACTAGACCAGTGGAATAATCCTCTGGAGTTCAAGCCATCTACTGTGAATGACATCTCTTTCTTTAATTTTAATTCTGTTTCATCTACAAAATAG 1413 0.4827 MLMEEHKLPLLFQITFSFFLLTQSLLATSHPPYPIPLTVSVSDFGAAGDGVRYDTTSIQSAINSCPGSSPCRVIFPAPGKYLTATVFLKSGVVLFVEPGATILGGPRLEDYPREPSRWYVVLAENATDVGIDGGGVVDGQAEKFVVREDPRKNIMVSWNQTGVCSGDECRPRLVGFLGCRNVRVSNITLNQPAYWCLHLVRSENISIEDIAIYGDFNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSYTGPVYNLTVTNCWIRSKSSAIKFGSASWFDFKHFVFDNITIVDSHRGLAFQIRDGGNVSGIVFSNINISTRYYDPLWWGRAEPIYVTTCPRHSTSKEASISDVLFINITANSENGIFLAGSKRGLLRNLRFVNMNITYRRFTSYAGGLLDYRPGCQELVKHRTAGMMMEHIEGLEVKNVEMRWSNSNNQLDQWNNPLEFKPSTVNDISFFNFNSVSSTK* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1255 470 Gene3D - 21 397 IPR012334 -
Lja1g1255 470 SMART pbh1 255 276 IPR006626 -
Lja1g1255 470 SMART pbh1 202 228 IPR006626 -
Lja1g1255 470 SMART pbh1 346 371 IPR006626 -
Lja1g1255 470 SMART pbh1 309 331 IPR006626 -
Lja1g1255 470 SMART pbh1 229 250 IPR006626 -
Lja1g1255 470 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 29 467 - -
Lja1g1255 470 Pfam Glycosyl hydrolases family 28 120 389 IPR000743 GO:0004650|GO:0005975
Lja1g1255 470 PANTHER PECTIN LYASE-RELATED 29 467 - -
Lja1g1255 470 SUPERFAMILY Pectin lyase-like 24 393 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1255 Lja-Chr1 12928089 12931739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1255 23 470 Glycoside Hydrolase AT3G57790 65.795 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1255 - - gmx:100794954 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1255 1 12928089 12931739 Lja1g1255 1 12928089 12931739 ECH