Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1236 ATGTCGTCGGAACCAACCACCTCTTCCTCTGGTGGCCCCGCCGCACCGAGGGACCCAACCAACGTGATTCACCCACGCCGCGAGCCCTTCGAGCACGGCCTGTTACCAATCCCGCGTCTCATCTTCTCCGACCCGACGCAAACCCTAATCTCGTTGAAGCAGAAGCTTCTAGAATCGTCCTCCAACCACCGTGTAGGCTCCGCCGCCATCGCCGAGTCGCTTCAGATCTCCGTCGAACACGCTAGGCTTGTTCTCGATACCCTTGCCTCCGTCCTCCACTCCGACGCTGAGCCTCTCGTTGCCGCTGGACTCGGAGAAACCGATTCCGTTGGTGTAGATGTTCATGATCTGGTTCTCTTCCTCTACATTCAATCGTATAAGAGACTGCTTCCCCGGACGCACAAGGATTCCGCTGCGGTTGCTGATGTCTGGCCTTCAACCTCCGCCTTCGATGGATACTTGTCCGCTCTCTCTCCGCTTCAGCTTGTGCGCAGCAACAGTCGGCGGTTCATGCCGTCGCAGAATGATGAAGAGGCGCACCAATTGTTGTATCTGCAAAAGCACTTGGCTAACATTCTGTCTCTTCTGGCAGAGCCTGTGGAGGGGGAACCCGAAGAGTCACTGGTGTTAACCATGGATAGATTTGAGCACCTTGGATTTCTATTTCATTTTGGTGACAAGGGATCTGAAGGAAATTCTTTGAGTCAATCTTCTCCGTTTTTTGCAAACTCCGATCCTGACATGCCTGCTGTTCCTGTACCTGCTGCTCAAGTTCATGATTGGCTTCTGCAGAATATAGCTTCTGCTCTAGAACATATTGCTGAACGGAATTCTTCAAAGGAAAATGGCCCAGCTAGTGCCTCTGATCAGGATGTTGCTATGACTGATGCATGTACTGCCCCCGTAAAGGTCTCATCAAGTACTAGAGGTGCAAGTTTCATTGAAGGGATCTCTAAATCGTCATATGTGAAGCACGCATCTGACATTAAAGGTTCCTCTATAAAGGTTCTAAATTGCCAAGAGTCTAGCATCTACATCTTAGCACCTTTCAGATATGCCACTGTCTATGGATGTTCAGATGCTACTATAGTTCTAGGAGCAGTTGGAAAGGCTGTGAGAGTAGAACACTGTGAACGAGTACATGTGATTGTAGCAGCAAAACGAATTTGTATTGCTAATTGCCGTGAATGTATTTTCTTTCTGGGGGTGAACCAGCAACCTCTTATTCTTGGAGATAACCATAAGTTGCAGGTGGCACCTTATAATACATTTTACTCCCAGTTGGAGGAGCATATGAATGAAGTTGGAATTCTGCCCACGGTGAACAGATGGGATGAACCTTTAGCATTGGGCATGGTTGATCCTCATGATTCATTATCTCATCCGGCAGGTGTCTCTGATGTTCAAGCTGAGTCTGCTACACGGGTGGACCCTGATCAGTTCACTAATTTTGTGATTCCAAATGGGCTTGGAGGCGAGTCCACCGGGTCTACAAAAGTCAACCCGTTCGCATTACCTGACGCTTATAGGGCATCTCAACATAAAAATCAAAATAATTTAAGGGAGATAAGGCAGCTCTTAAGAGAAGCATCTTTAGAAGAAAGTCGTAAACGCGAATTGTCATCGGCCCTCCATGTGTACTTCAAGGAGTGGCTTTATGCTTCCGGGAACATTCGTCAACTTTACTGTCTACATGGTGATTGA 1704 0.4818 MSSEPTTSSSGGPAAPRDPTNVIHPRREPFEHGLLPIPRLIFSDPTQTLISLKQKLLESSSNHRVGSAAIAESLQISVEHARLVLDTLASVLHSDAEPLVAAGLGETDSVGVDVHDLVLFLYIQSYKRLLPRTHKDSAAVADVWPSTSAFDGYLSALSPLQLVRSNSRRFMPSQNDEEAHQLLYLQKHLANILSLLAEPVEGEPEESLVLTMDRFEHLGFLFHFGDKGSEGNSLSQSSPFFANSDPDMPAVPVPAAQVHDWLLQNIASALEHIAERNSSKENGPASASDQDVAMTDACTAPVKVSSSTRGASFIEGISKSSYVKHASDIKGSSIKVLNCQESSIYILAPFRYATVYGCSDATIVLGAVGKAVRVEHCERVHVIVAAKRICIANCRECIFFLGVNQQPLILGDNHKLQVAPYNTFYSQLEEHMNEVGILPTVNRWDEPLALGMVDPHDSLSHPAGVSDVQAESATRVDPDQFTNFVIPNGLGGESTGSTKVNPFALPDAYRASQHKNQNNLREIRQLLREASLEESRKRELSSALHVYFKEWLYASGNIRQLYCLHGD* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1236 567 PANTHER UNCHARACTERIZED 16 567 IPR039589 -
Lja1g1236 567 MobiDBLite consensus disorder prediction 1 15 - -
Lja1g1236 567 Pfam Tubulin binding cofactor C 331 446 IPR012945 -
Lja1g1236 567 MobiDBLite consensus disorder prediction 1 26 - -
Lja1g1236 567 PANTHER BNAC04G02540D PROTEIN 16 567 - -
Lja1g1236 567 Gene3D - 311 472 IPR016098 -
Lja1g1236 567 ProSiteProfiles C-CAP/cofactor C-like domain profile. 301 437 IPR017901 -
Lja1g1236 567 Coils Coil 523 543 - -
Lja1g1236 567 SMART carp 339 376 IPR006599 -
Lja1g1236 567 SMART carp 377 411 IPR006599 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1236 Lja-Chr1 12752322 12762469 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1236 K16810 - gmx:100819271 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1236 1 12752322 12762469 Lja1g1236 1 12752322 12762469 ECH