Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1217 ATGGAGAGTATTAAACATTTCAGCCATATCCACCCACTGCAGTTAAAGGAGGATCATCAAAACGATGTTGAGCAAGTCTTTTGCTCAGGTTGTGAAAAACCAATTTCAGGTCCTGTCTTCTGCTGCAACCAGTGCAACTATGTTCTTCACAAATCATGTGCAGAACTTCCAAACAAGAAGAAACATCCATTTCACCCTGAACATCACCTTACACTCCTTTCAACTCCCCCTTACGAAGGAATCTGCATATGCGATGCTTGCAGAGGTATCTTCAACAAGTTCGTCTACCATTGTTCTCTTTGCAAATTTGACCTTGACATAGCATGTGCTTCTCAGTGGAACCCTGATGATGGCCACAAGCATGCCTTTATCTCCTTGTGGAATCCAACATCACCATTTGTTTGTTACGCTTGTGGCGAGAAAGCAAGCGAGATCCTCTCGTGTGTTTGCTCCATTTGCCAGATTTGGGTTCATTCTAGCTGCGCTGATTATTGGGATACCACGACAAAAAAAGATGAAGTAGATACAGAATCTGATCAATCCCAAGATATTGATTTCAGTTTATTTTGTCATGAACATTTGTTAAGGTTCGTGGAGGAACAGAGTTTGCAAAATGTTGATGATAAAATTAAACTCTGTGATGGGTGTATCCAACCCATTATTACCTCATCACCTTTCTTTTCTTGTTCTGAAAATTGTGGATTTGTTCTTCACCAAAGTTGTGCTGAGTTGCCTAAAACGAAGAAACACCCTTTTCACATACACCATTTGAGTCTTCTCCCCAAGGCACCTCCATATGATGGCGTTTTTAGGTGTGATGGATGTAGAGGGCTGAGCAATGGCTTTGTGTATCGCTGTGATGAGTGTCAATTCGACCTTGATGTTTGTTGCGGTTCTCTAAAGGACACAATTGAACATGAAAGTCACAATCACCCTCTTCACTTAGAGAAGACGGGCGCTCCCAGAATATGCAAAGGTTGTCACCTTCAGTCTAATCATGTCTATGTGTGTCATGTTTGTGAAGATTTCGCTATTGATTGTGGATGCGCTACTCTGCCGAATAAGGCATGGCACGTGTTTGGCAAACATCCTCTGAAGCTAACATGTTTTGCTGGAACTGATTTGAGGGGAAATGAATGTGGAATTTGCAGTGAGAAAATGTCATTGGAGCAATGGTTCTATTTCTGTGATGATTGTGACTTTGCTGCTCATACTCATTGTGTTGTTGGCAAGTGTTGGCGTGTGAAGTTTGGAGGAACTTTCAAATATGATACTCACTCCCACCCTCTGGCTTTGGTGGAAGAAACTAGGAAGAACACTGCATGTGAAGCCTGTGATGAACAATGCAATGGATTGGCACTTGAATGTGGGCAATGCAAAAGCTACTACCACAGAGAAGGGAAGTGTTTCTGGGAACAGTTCAAAGAGAGTGCAAAGTATTTTGCATTCTCGGGAACCATGTTGCGGTACAGGTATGCAGCAAATGTATTTGCTGCCACTCCCAATGTAACCACCAAGGGAGAGACTAAACATAGAAAATAA 1542 0.4222 MESIKHFSHIHPLQLKEDHQNDVEQVFCSGCEKPISGPVFCCNQCNYVLHKSCAELPNKKKHPFHPEHHLTLLSTPPYEGICICDACRGIFNKFVYHCSLCKFDLDIACASQWNPDDGHKHAFISLWNPTSPFVCYACGEKASEILSCVCSICQIWVHSSCADYWDTTTKKDEVDTESDQSQDIDFSLFCHEHLLRFVEEQSLQNVDDKIKLCDGCIQPIITSSPFFSCSENCGFVLHQSCAELPKTKKHPFHIHHLSLLPKAPPYDGVFRCDGCRGLSNGFVYRCDECQFDLDVCCGSLKDTIEHESHNHPLHLEKTGAPRICKGCHLQSNHVYVCHVCEDFAIDCGCATLPNKAWHVFGKHPLKLTCFAGTDLRGNECGICSEKMSLEQWFYFCDDCDFAAHTHCVVGKCWRVKFGGTFKYDTHSHPLALVEETRKNTACEACDEQCNGLALECGQCKSYYHREGKCFWEQFKESAKYFAFSGTMLRYRYAANVFAATPNVTTKGETKHRK* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1217 513 Pfam C1 domain 251 297 IPR004146 -
Lja1g1217 513 Pfam C1 domain 190 242 IPR004146 -
Lja1g1217 513 Pfam C1 domain 7 54 IPR004146 -
Lja1g1217 513 Pfam C1 domain 63 110 IPR004146 -
Lja1g1217 513 ProSitePatterns Zinc finger PHD-type signature. 28 101 IPR019786 -
Lja1g1217 513 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 171 469 - -
Lja1g1217 513 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 8 164 - -
Lja1g1217 513 SUPERFAMILY Cysteine-rich domain 35 112 IPR046349 -
Lja1g1217 513 SUPERFAMILY Cysteine-rich domain 119 167 IPR046349 -
Lja1g1217 513 SUPERFAMILY Cysteine-rich domain 222 311 IPR046349 -
Lja1g1217 513 SUPERFAMILY Cysteine-rich domain 332 413 IPR046349 -
Lja1g1217 513 SMART PHD_3 212 276 IPR001965 -
Lja1g1217 513 SMART PHD_3 27 88 IPR001965 -
Lja1g1217 513 SMART PHD_3 379 446 IPR001965 -
Lja1g1217 513 SMART PHD_3 134 194 IPR001965 -
Lja1g1217 513 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 171 469 - -
Lja1g1217 513 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 8 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1217 Lja-Chr1 12582699 12584240 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1217 - - gmx:121174110 524.628