Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1216 ATGGCATCAGCACAGAAGAACCAAAGTTCTGTTTCTCACTTCAGCCACCCACACCCTTTGGAACACACCACCGCACCCTCCACCACATCAAACCCAACAACATGCTCAGGCTGCAAACTAAGAGTCACCACCAACGACAACGACTATTACCGCTGCAGCAAAACCAAAACCTGCAACTTCTCTCTTCACTCTGTCTGCTACAACATGCCCTTCATCACAAACCACCCTTCTCATCCAACCCACGACCTTCTCCTCTTCCTCGCACCTCCATCATTACCATCACTCAACACCTGCTTCGCGTGTAAGAATCATGCCACAGGCCTCACCTACCACTGTGCTGAATGCACCATCTTCTTCCACCCTCTCTGTTTATTACTTCCTCTGTCTCTTGCAATCAAACACCACCCTCACAAAATCAAGCTTGAATTCTTACCACCCTATGACTTCTATTGTGATTTCTGCAACAAACCCAGTTTCAGTGGGTGGCTCTACAGGTGCAGCATGTGTGAATTCGACATCCACATAGCTTGTGCCGTTGATAACTTAGAACACCACATGGATAACTATAAGATCATGCGTTTGGTGGCAGAGCAGGTTGGCGGGGGAATCAGCAGAACCCAATTTGACAATGGAATCACTGGAGCATGGGATAAGAAATTTTACAATCAAAGAAAAAATCGTAACATGAGCAGTGGCAACATCATGAAGGTTGTTGAACTTGAATTACAAGAAACAGAACAAAGCTCTGTTTTTCAAGAAACAGAGGAAAGCCCTGTTTTTGCTTTGGCAAATTTTGAAGAAAAAACTCCACTTCGTGATAAATTGGTTCCACTCTCTGATTTTGCTAGTCCTCCTACTCCATCACAAAGTAACCAATTTGGTGAATCGTATTTTTCAATCGATTTGACGAAGTCGTATTCAAATTCAACCTATGATCACAGAAGCCAGGTGCCAAAAGAAGGAACTGAATTTGTTGTGCCAGAGAGCATTGTTGAACGAGCTGAAGAATCATATGATGTTGTGAAATGGTCAAGCAATAGTTCATGTAATTCGCATCAGCATCTGAATAAGCTGCATGAAGCATTTTTCAAAGGAGGGCTTGTTAGTGATTATGGGGAATCAAGGCATATGGAAGTAATGAAGAATTCTAAGGAGAGCTTAGCCAAATGGTCTCATGAAGATCATATAATCACCAAACCAGAGTCAGAAAGATGCAGCCGTTCATGTTGGAGGAAGTTCCTAACTTGCTGCCATTAG 1257 0.4328 MASAQKNQSSVSHFSHPHPLEHTTAPSTTSNPTTCSGCKLRVTTNDNDYYRCSKTKTCNFSLHSVCYNMPFITNHPSHPTHDLLLFLAPPSLPSLNTCFACKNHATGLTYHCAECTIFFHPLCLLLPLSLAIKHHPHKIKLEFLPPYDFYCDFCNKPSFSGWLYRCSMCEFDIHIACAVDNLEHHMDNYKIMRLVAEQVGGGISRTQFDNGITGAWDKKFYNQRKNRNMSSGNIMKVVELELQETEQSSVFQETEESPVFALANFEEKTPLRDKLVPLSDFASPPTPSQSNQFGESYFSIDLTKSYSNSTYDHRSQVPKEGTEFVVPESIVERAEESYDVVKWSSNSSCNSHQHLNKLHEAFFKGGLVSDYGESRHMEVMKNSKESLAKWSHEDHIITKPESERCSRSCWRKFLTCCH* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1216 418 Pfam C1 domain 14 66 IPR004146 -
Lja1g1216 418 Pfam C1 domain 134 178 IPR004146 -
Lja1g1216 418 PANTHER - 11 256 - -
Lja1g1216 418 SUPERFAMILY Cysteine-rich domain 46 137 IPR046349 -
Lja1g1216 418 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN PROTEIN 11 256 - -
Lja1g1216 418 SMART PHD_3 97 155 IPR001965 -
Lja1g1216 418 SUPERFAMILY Cysteine-rich domain 133 179 IPR046349 -
Lja1g1216 418 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1216 Lja-Chr1 12578283 12580862 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1216 - - lja:Lj1g3v4327760.1 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1216 1 12578283 12580862 Lja1g1216 1 12578283 12580862 ECH