Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1206 ATGTCTGTTATAGGCGCATGTTCACATTTTCTCTACGGAGATTTTCACCAGAGAGATGAACAGAGTCCCTTGTACTTGGTAGGTAGCAGGGGGTGTTTGTTTCCGAGCAAGAGTGGTTGTGGGAACTCATTGATTCAAAGAAAGAGCAGAGAAGGGAAGATTAGGAAGAGGAATTTGCGTGTGGAAGCTATGTGGGATATTTCAAGACCGAGTACGGTGGAGTTGATACCCATCAATGATTCTGAGCAGCTGGATCAGATTCTAGTTCGAGCTCAGCAAAACTCAGAGCCCATCATCATTGACTGGATGGCTTCTTGGTGCCGGAAATGCATCTATTTGCAGCCCAAGTTGGAAAAATTAGCAGCTGAATTTGACACCAAAGTCAGTTTTTATTGTGTGGATGTCAATAAAGTTCCTCAGACTCTAGTCAAGCGTGGCAATATATCTAAAATGCCAACAATTCAGTTATGGAAAGATGGAGAGATGAAAGAAGAAGTTATTGGAGGCCATAAGGGCTGGCTAGTAATTGAAGAAGTCAGAGAAATGATCCAAAAGTTTATATGA 564 0.422 MSVIGACSHFLYGDFHQRDEQSPLYLVGSRGCLFPSKSGCGNSLIQRKSREGKIRKRNLRVEAMWDISRPSTVELIPINDSEQLDQILVRAQQNSEPIIIDWMASWCRKCIYLQPKLEKLAAEFDTKVSFYCVDVNKVPQTLVKRGNISKMPTIQLWKDGEMKEEVIGGHKGWLVIEEVREMIQKFI* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1206 187 CDD TRX_family 82 184 - -
Lja1g1206 187 ProSiteProfiles Thioredoxin domain profile. 58 187 IPR013766 -
Lja1g1206 187 SUPERFAMILY Thioredoxin-like 67 185 IPR036249 -
Lja1g1206 187 Pfam Thioredoxin 92 171 IPR013766 -
Lja1g1206 187 PANTHER THIOREDOXIN-LIKE 3-2, CHLOROPLASTIC 1 186 IPR044253 GO:0009570
Lja1g1206 187 Gene3D Glutaredoxin 71 186 - -
Lja1g1206 187 PANTHER THIOREDOXIN-LIKE 3-1, CHLOROPLASTIC 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1206 Lja-Chr1 12395146 12397397 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1206 - - gmx:100783648 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1206 1 12395146 12397397 Lja1g1206 1 12395146 12397397 ECH