LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g1201	ATGGACGAAGAAGAAGAGCAGCAGAAGCTTCCAGATCTGGTCAAGGAACTCGTCCACCGTCTCCTCCGCCACAATCTCCCCGCCGACTCACCACCACTAAACCCTAACTCCCCGGAATTTCAAAAACCCCTCCGCTACGCCCTCCGCATCCTCTCCAGCCGCCTCAACCCCTCTCTCTCCGCCCCCGACGCCGCCGCCGTCGCCGAACAAATCAAACGCCGTCTCGCCACTCACGGCCGCTCCGCCGACGCACTCTCGTTCGCCGACTTATACTCCAAGTTCGCCGCCAGAGCCACCACTGTTAACAACAAATGGGCCCTGCTCTACCTCCTCGAGATCCTCGCAGAAGATCGCAAGGCACTGGCTCAGACCCAGTTCCATCCCTCCCTCATTCTTCCCTCCCTCCCAATCCCTCCCAACCACCACCACGAGGGACCCAACGACGGCGTTTTGCTCCTCGCTAAGGATCCAGAGAATCGCCGCGACATCGCGTTTCGCGAGTTTGTGAATTTGGTCAGGGAGGAAAATGAGGTCTCCGAGGAGGCTCTGGTGAAAGACGTGCTCTATGCCTGCCAAGGGGTTGAAGGTAAATACGTGAAATTCGATGTTGTCAACAATTGTTACGCTTTATTGGATTCGATTAGGGTCACTAGGGCCACTAGGAGCATGGTTCATAAGCTTAGTGAACTAGGAGGGTTGTTTAAGAAGGTTACTGGGTATATATGGCAGAGTATGGATCGGTTTCCGGCCGAAGATGTTGGAACAGTTGGGCAGGCTTTTTGTTCTGCTTTGCAGGATGAGCTGAGTGAGTACTATAAGCTTTTGGCGGTGCTTGAGGCTCAGTCTTCGAACCCGATTCCTTTGGTTTCTGAATCGGCGAGCTCCGGGAACTATCTTTCTCTGAGGAGATTGGCGGTTTGGCTTGCGGAGCCAATGGTGAAGATGAGGCTTATGAGTGATTTGGTTGATAAATGTAAGATTTTGCGCGGTGGGGCGATGGCTGGTGCGATTCACCTGCACGCGCAGCATGGTGATCCGTTGGTTCATGAGTTCATGAAGAGGCTGCTGCAGCGTGTTTGTTCTCCGTTGTTTGAGATGGTGAGGAGATGGGTTTTGGAAGGGGAGTTGGAAGATATCTTTGCTGAGTTTTTCATTGTTGGGCAGCCTGTGAAGGCTGAGTCCCTTTGGAGAGAAGGGTATAGGCTCCATGAGGTGATGCTTCCCTCGTTCATTCCGTCTTCGCTTGCTCAGAGGATCTTGAGGACTGGGAAGTCCATTAATTTCCTTCGTGTTTGCTGTGAGGATCGCGGCTGGGCTGATGCTGCAAATGAAGTTGCCACTGATACAGGGGCCACCGCGAGAAGGGGTGGTTTTGGTTATGGTGAGACTGATACCCTTGAGTCGTTGGTGGATGAAGCTGCTAAAAGAATTGACAAGCATCTGTTAGATGTGATTTACACGAGATACAAATTCAAAGATCACTGCCTTGCAATTAAGCGGTATTTGTTGCTCGGCCAGGGTGATTTTGTGCAATATCTGATGGATATTGTTGGGCCTGAGCTTTCCGAGCCAGCTAACACTATAAGCTCTTTCAAACTTGCGGGATTGCTGGAAACTGCAATTCGGGCATCTAATGCTCAGTATGATGATCCTGACATTTTGGATAGGCTAAGGGTCAAAATGATGCCACATGAAAGTGGAGACAGGGGCTGGGATGTGTTTTCACTTGAATATGATGCAAGTGTTCCACTAGATACTGTGTTCACAGAGTCTGTAATGGCAAAGTATCTAAGAATTTTTAATTTTCTGTGGAAGCTTAAAAGAGTGGAACATGCACTTATTGGTGCCTGGAAAACCATGAAACCAAACGGTATTACTTCTAGTTCCTATACCAGATTGCAACATGCAGTAAAGATGCAGTTAGTTTCAACATTGAGGCGCTGCCAGGTTCTTTGGGTTGAAATTAATCACTTTATTTCAAACTTGCAATACTATATTATGTTTGAAGTCTTGGAGGTATCATGGTCAGATTTGTTAAGTGAGATGGAAGTAGCCAAGGATCTTGATGATCTACTTGCAGCTCACGAGAAATATCTGCATTCAATTGTAGAGAAATCTCTCCTTGGAGAGCTTTCCCAATCCCTTTACAAGTCACTATTGGTAATATTTGACCTTATATTACGTTTTCGCAGCCATGCGGATCGGTTGTATGAAGGTATTCATGAATTGCAAGCAAGAATCACAGAATCCTCCCGATCCTCTCGAGACCAGAAAAAATCACGAAAGCAGCTAAATGATGAGTCTGGGGAACAAGGATCCTGGATTGCTGATGGGAGAAAAGCCCTAACACAACGTGCTGGTGAATTTCTTCGAAATATGGAACAAGATCTGGATGCAATTGCTACGGATTACTCATCATTGCAAGAGGAATTCATTTCCCAGTTGCCTGTACAGCAGCATGTTGATCTAAAGTTTCTCTTTTTCCGTCTTGACTTCAATGAGTTTTATGGGCGGTTGAGTCCTAGCATGTAG	2532	0.4783	MDEEEEQQKLPDLVKELVHRLLRHNLPADSPPLNPNSPEFQKPLRYALRILSSRLNPSLSAPDAAAVAEQIKRRLATHGRSADALSFADLYSKFAARATTVNNKWALLYLLEILAEDRKALAQTQFHPSLILPSLPIPPNHHHEGPNDGVLLLAKDPENRRDIAFREFVNLVREENEVSEEALVKDVLYACQGVEGKYVKFDVVNNCYALLDSIRVTRATRSMVHKLSELGGLFKKVTGYIWQSMDRFPAEDVGTVGQAFCSALQDELSEYYKLLAVLEAQSSNPIPLVSESASSGNYLSLRRLAVWLAEPMVKMRLMSDLVDKCKILRGGAMAGAIHLHAQHGDPLVHEFMKRLLQRVCSPLFEMVRRWVLEGELEDIFAEFFIVGQPVKAESLWREGYRLHEVMLPSFIPSSLAQRILRTGKSINFLRVCCEDRGWADAANEVATDTGATARRGGFGYGETDTLESLVDEAAKRIDKHLLDVIYTRYKFKDHCLAIKRYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLAGLLETAIRASNAQYDDPDILDRLRVKMMPHESGDRGWDVFSLEYDASVPLDTVFTESVMAKYLRIFNFLWKLKRVEHALIGAWKTMKPNGITSSSYTRLQHAVKMQLVSTLRRCQVLWVEINHFISNLQYYIMFEVLEVSWSDLLSEMEVAKDLDDLLAAHEKYLHSIVEKSLLGELSQSLYKSLLVIFDLILRFRSHADRLYEGIHELQARITESSRSSRDQKKSRKQLNDESGEQGSWIADGRKALTQRAGEFLRNMEQDLDAIATDYSSLQEEFISQLPVQQHVDLKFLFFRLDFNEFYGRLSPSM*	844

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g1201	843	PANTHER	GAMMA-TUBULIN COMPLEX COMPONENT	32	125	-	-
	Lja1g1201	843	PANTHER	GAMMA-TUBULIN COMPLEX COMPONENT	147	831	-	-
	Lja1g1201	843	Pfam	Gamma tubulin complex component C-terminal	493	836	IPR040457	GO:0043015
	Lja1g1201	843	Gene3D	-	492	835	IPR042241	-
	Lja1g1201	843	MobiDBLite	consensus disorder prediction	751	771	-	-
	Lja1g1201	843	Coils	Coil	790	810	-	-
	Lja1g1201	843	MobiDBLite	consensus disorder prediction	751	766	-	-
	Lja1g1201	843	Coils	Coil	261	281	-	-
	Lja1g1201	843	PANTHER	GAMMA TUBULIN COMPLEX PROTEIN	32	125	IPR007259	GO:0000226\|GO:0000922\|GO:0005815\|GO:0007020\|GO:0043015
	Lja1g1201	843	PANTHER	GAMMA TUBULIN COMPLEX PROTEIN	147	831	IPR007259	GO:0000226\|GO:0000922\|GO:0005815\|GO:0007020\|GO:0043015
	Lja1g1201	843	Pfam	Gamma tubulin complex component N-terminal	184	486	IPR041470	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g1201	Lja-Chr1	12369303	12372812	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g1201	K16570		-	gmx:100784710	1387.47

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g1201	1	12369303	12372812	Lja1g1201	1	12369303	12372812	ECH