Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1186 ATGAAAAATTTGCTGATCGTTGTTCCTCGCTCACTACGCGGAACCCCTAAGCAACCCAAATCACTGCATCATCTCCAACAGCGTCAACCACTGTCCTCTGCATCCAAATGGAACTCCACAACCAACGTCGTAATCACCAACCCAATCCTCGTGATCATGGAATCATGTTCCACCATGCGGCAACTGAAGCAGATTCATGCCCGCATGACCCGGACCGGTCTCATCACCCACACGTTCCCGGCGAGCAGGCTCCTCGCCTTCTGCGCGCTCGCCGATGCCGGAGACATTCGCTACGCCCACCTTCTCTTCCACCGCGTCATCGACGAGCCCAACACTTTCATGTGGAACACCATGATCAGAGGATATCGGAAAGCCAGGAACCCCAACATTGCCTTCTCCTACTTCCTCCGAATGCTGCGGCACCGCGTTGAAATGGACTGCAGAAGCTTCGTTTTCGCGCTAAAGGCGTGTGAGGAGCTATCTGGGGATTTTGAGGGGGAATCAGTGCATTGCGTTGTGAGGAAACTGGGGTTTGATTCGGAGTTGCTTGTGAGGAATGGGTTGATCCATTTTTATGCTGATCGTGGTTGGTTGAAACATGCGCGCGAGGTGTTTGATGAAAGTTCTCTAAAGGATGTTGTTACTTGGACCACGATGATTGATGGGTATGCGAGCCGTAATTGTTCGGAATTGGCTATGGAGCTGTTCAATTTGATGTTGCGCGGTGATGTTGAGCCGAATGAGGTGACGCTGATTGCGGTGCTTTCGGCGTGCTCTCAGATGGGTGACATTGAAATGGGGAGAAGAGTTCATGAAAACATGGAAAAGAAGAATATGAGGTGTAGTTTAAATTTGCACAATGCCTTATTGGACATGTATGTGAAATGTGGCAGTTTGGTGGCTGCTAGAGAGCTTTTTGATAGAATGGAAACTAGGGATGTGTTCTCGTGGACTAGCATGGTTAACGGGTATGCCAAATGTGGTGACTTGGAAAATGCAAGGAGGTTTCTCGATCAAACTCCTCACAAAAATGTCGTCTCCTGGAGTGCAATGCTTGCAGGATATTCTCAGAATAACAAACCCAAGGAATCGTTGAAGTTGTTTCATGAAATGATGGGGGCAGGTGTTGTTCCGGAGGAGCACGCCTTAGTGAGTGTGCTCTCTGCTTGTGGCCAGCTGAGTTGCTTGAATTTAGGTCATTGGATTCATCAACATTTTGTCATTGAAAAAGGGATGCACCCTAGTGTCACTCTGGCAAATGCAATTCTTGACATGTATGCCAAATGTGGAAGCATAGAGGCTGCAGCGGAAGTCTTCAATGCAATTTCAGAGAGGAACCTGGTTTCATGGAATTCTATGATTGCAGGGTATGCTGCTAACGGTCAAGCAAAGCAAGCTGTCAACGTATTTGACCAGATGAGGTGCATGGGATTTAAGCCGGACGACATTACATTTGTGAATTTGTTGACAGCCTGCAGTCATGGTGGCTTAATCTCAGAAGGCCAAGAATATTTTTACACCATGGAAAGAAACTATGGGATAAAACCCAAAAGGGAACATTATTCATGCATGATTGATCTTCTGGGCCGAACTGGGCTCCTGAAAGAAGCTTACGAGTTGATAACGAGTATGCCAATGCAACCTTGTGAGGCTGCATGGGGTGCCCTTCTAAATGCTTGTAGAATGCATGGCAATGTTGAGCTGGCCAGGTTGTCGGCTTGTAATCTTCTAAGCTTGGATCCAGAAGATAGTGGAATATATGTTCTGCTGGCGAATATTTGTGCTAATGAGAGAAAATGGGGTGATGTGAAGAGGGTGCGAAGTTTGATGAGAGACAAGGGTGTGAAGAAGATTCCTGGTCATAGCTTAGTAGAGGTAGATGGTGAATTTAAAGAGTTTTTAGTGGCAGATGAATCACACCCTCAATCTGAGGAGATATATAAAGTACTAGATGAAATATTTTTGTCGTCAGAATTGGAAGACTATGACACTGACATATTTGTATAA 2007 0.4629 MKNLLIVVPRSLRGTPKQPKSLHHLQQRQPLSSASKWNSTTNVVITNPILVIMESCSTMRQLKQIHARMTRTGLITHTFPASRLLAFCALADAGDIRYAHLLFHRVIDEPNTFMWNTMIRGYRKARNPNIAFSYFLRMLRHRVEMDCRSFVFALKACEELSGDFEGESVHCVVRKLGFDSELLVRNGLIHFYADRGWLKHAREVFDESSLKDVVTWTTMIDGYASRNCSELAMELFNLMLRGDVEPNEVTLIAVLSACSQMGDIEMGRRVHENMEKKNMRCSLNLHNALLDMYVKCGSLVAARELFDRMETRDVFSWTSMVNGYAKCGDLENARRFLDQTPHKNVVSWSAMLAGYSQNNKPKESLKLFHEMMGAGVVPEEHALVSVLSACGQLSCLNLGHWIHQHFVIEKGMHPSVTLANAILDMYAKCGSIEAAAEVFNAISERNLVSWNSMIAGYAANGQAKQAVNVFDQMRCMGFKPDDITFVNLLTACSHGGLISEGQEYFYTMERNYGIKPKREHYSCMIDLLGRTGLLKEAYELITSMPMQPCEAAWGALLNACRMHGNVELARLSACNLLSLDPEDSGIYVLLANICANERKWGDVKRVRSLMRDKGVKKIPGHSLVEVDGEFKEFLVADESHPQSEEIYKVLDEIFLSSELEDYDTDIFV* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1186 668 Pfam PPR repeat 315 339 IPR002885 -
Lja1g1186 668 Pfam PPR repeat 113 142 IPR002885 -
Lja1g1186 668 Pfam PPR repeat 520 545 IPR002885 -
Lja1g1186 668 Pfam PPR repeat 287 313 IPR002885 -
Lja1g1186 668 Pfam E+ motif 632 653 IPR046849 -
Lja1g1186 668 Gene3D Tetratricopeptide repeat domain 166 265 IPR011990 GO:0005515
Lja1g1186 668 Gene3D Tetratricopeptide repeat domain 266 408 IPR011990 GO:0005515
Lja1g1186 668 Pfam PPR repeat family 446 493 IPR002885 -
Lja1g1186 668 Pfam PPR repeat family 343 390 IPR002885 -
Lja1g1186 668 Pfam PPR repeat family 211 258 IPR002885 -
Lja1g1186 668 PANTHER - 165 328 - -
Lja1g1186 668 PANTHER - 51 277 - -
Lja1g1186 668 PANTHER - 320 626 - -
Lja1g1186 668 TIGRFAM PPR: pentatricopeptide repeat domain 114 147 IPR002885 -
Lja1g1186 668 TIGRFAM PPR: pentatricopeptide repeat domain 448 481 IPR002885 -
Lja1g1186 668 TIGRFAM PPR: pentatricopeptide repeat domain 346 378 IPR002885 -
Lja1g1186 668 TIGRFAM PPR: pentatricopeptide repeat domain 315 339 IPR002885 -
Lja1g1186 668 TIGRFAM PPR: pentatricopeptide repeat domain 214 248 IPR002885 -
Lja1g1186 668 TIGRFAM PPR: pentatricopeptide repeat domain 286 314 IPR002885 -
Lja1g1186 668 Pfam E motif 563 625 IPR046848 -
Lja1g1186 668 Gene3D Tetratricopeptide repeat domain 462 627 IPR011990 GO:0005515
Lja1g1186 668 Gene3D Tetratricopeptide repeat domain 28 165 IPR011990 GO:0005515
Lja1g1186 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Lja1g1186 668 SUPERFAMILY TPR-like 184 338 IPR011990 GO:0005515
Lja1g1186 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Lja1g1186 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 343 IPR002885 -
Lja1g1186 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Lja1g1186 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Lja1g1186 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1186 Lja-Chr1 12159245 12161279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1186 99 666 Glycoside Hydrolase AT3G49170 33.102 2.45e-96 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1186 - - lja:Lj1g3v4393320.1 1131.32