Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1183 ATGTCTTCCACAGAAGCTGCTACCACCACCAAGAAGGGCGGAAGAGGCAAACCCAAAACCACCAAATCCGTCTCCAGATCCTCCAAAGCCGGCCTCCAATTCCCCGTCGGCCGCGTCGCTCGCTACCTCAAGGCCGGCCGCTACTCCCAGCGCGTCGGATCTGGCTCCCCTGTTTACCTCTCCGCAGTCCTCGAATACCTCGCCGCCGAGGTTTTGGAGCTTGCTGGTAACGCTGCAAGGGACAACAAGAAATCGAGGATAATTCCGAGGCACATTCAGCTTGCGGTGAGGAACGATGAGGAGTTGAGCAAGTTGATGGGGCATGTGACGATTGCGAGCGGTGGTGTTCTGCCGAAGATTCACCAGAACTTGTTGCCGAAGAAGGTTGCTGGGAAGGGGAAAGGGGAAATTGGATCTGCTAGTCAAGAGTTCTAG 435 0.5609 MSSTEAATTTKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYSQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELSKLMGHVTIASGGVLPKIHQNLLPKKVAGKGKGEIGSASQEF* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1183 144 PRINTS Histone H2A signature 51 66 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lja1g1183 144 PRINTS Histone H2A signature 108 126 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lja1g1183 144 PRINTS Histone H2A signature 66 79 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lja1g1183 144 PRINTS Histone H2A signature 80 94 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lja1g1183 144 PRINTS Histone H2A signature 22 44 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lja1g1183 144 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g1183 144 PANTHER HISTONE H2AXA-RELATED 8 142 - -
Lja1g1183 144 PANTHER HISTONE H2A 8 142 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lja1g1183 144 SUPERFAMILY Histone-fold 25 128 IPR009072 GO:0046982
Lja1g1183 144 Gene3D Histone, subunit A 9 135 IPR009072 GO:0046982
Lja1g1183 144 SMART h2a4 11 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lja1g1183 144 Pfam C-terminus of histone H2A 100 134 IPR032454 -
Lja1g1183 144 Pfam Core histone H2A/H2B/H3/H4 8 97 IPR007125 GO:0003677
Lja1g1183 144 CDD H2A 11 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lja1g1183 144 ProSitePatterns Histone H2A signature. 30 36 IPR032458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1183 Lja-Chr1 12120786 12121579 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1183 K11251 - gmx:100818215 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1183 1 12120786 12121579 Lja1g1183 1 12120786 12121579 ECH