Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1180 ATGAAGCGAGTATGGAGATTCTCTTCAAACGCAGCAGCGCGTGGAACCCGTTTCTCGTCAAAACCCAAACCCATTCCCTCCACCACCACCGCCACCACCACCACCACCACCACCGTGCTCTCTCATGGCCTCACCCGCCATTCCAGCACCCTGTCAACCGGACTCACAGGCATCGTCGCCTTGTTCACCGCAAAGTCCCCTCCGAACAAAGACGAACTCACCGTCAAAGTCGCGATTCTCAGGAACGAATTGGTTCGAGAAGCATCGGACTCTGCAAAGATTCTCCGCATCTTGAATGAAAACTCTGAATCTCTGAATCGCCCTCACCCTGCTGGATCCGTTTTGCTTGAGCTTCTCAATCAATTGGATTCATTGCCTTCCCTTGCCCTTCAGGTGTTTAATTGGAAGAGATATAGAAAGAGAAATGATCCTGGAACCCCAATTGATGCATATGAGTACTCTAAGGGTATAAAGATTGCGGGTAAAGCGAGGAATGTTGAACTTGCTGTTCAGTTATTTAAGGAGGCTGCCAACAAGGGTATCAAGACGACCGGCACTTACAACGCGCTTATGGGTGCTTATATGTTCAATGGTCTGGCTGATAAGTGCCAGGAATTGTTTTTTGACATGAAGAAAGACGCGACTTGTGTGCCGTCGATTCCGACTTACAATATTCTTATATCTGTTTTTGGTCGATTAATGCTGGTTGATCACATGGAAGCGACGTTGCGGGAGGTGAATAGGTTGGGGCTTACGCTTAATGTGTCCACTTATAATAATTTGATTGCTGGTTATATCTCGGCTTGGATGTGGGATGACATGGAAAGGGTTTATCAAACGCTGAAGTCGAGCGGTGTCGAGCCTAACTTGAAAACCCACCTGTTAATGATCCGCGGGTATGCGAATTATAGTAATGTGGAGAAGATGGAAGAAATATATTCTTTGGTGAGGGATCATGTGAATAAAAAAGAAATTCACCTGATCAAGTCTATGATATGTGCCTATTGTAAAAGCTCTGCAGCAGATAGAGTTATGAAAGTAGAGGGCTTGTTAGAGTTAATTCCAGAAGATGATTACAGTCCTTGGTTAAACGTGTGGTTGATTAAGCTATATGCCCGGGAAGACATGTTACTTGAAATGGAGAATGCAATAAATGAAGCATTTGAACATAAAACCTCCGTAGTAACTGTGGGTATTATGAGATGCATAATTGCAACTTATTTTCGGTGCAATGCTGTAGAAAAGCTAGATATTTTTGTGAGACGTGCTGAATCTGCTGGCTGGAAAAGCTGCCGCTCCTTATACCACTGTAAGATGGCCATGCATGGGTTACTGAAGCAGTTTGAAGAAATGCAATATGTCCTTAGGGAGATGGATGACGTCAAACTTTATTCCACCAAGAAAACATTATGGATAATGTACAAAGCATACTTGAACTCTGGTCAGAGAGCCATGGTTTCAAAAATAGTAGGACAAATGTTCAAGCATGGTTATGAAGTTCCCTTGGATGCATTTCCATCATGA 1524 0.439 MKRVWRFSSNAAARGTRFSSKPKPIPSTTTATTTTTTTVLSHGLTRHSSTLSTGLTGIVALFTAKSPPNKDELTVKVAILRNELVREASDSAKILRILNENSESLNRPHPAGSVLLELLNQLDSLPSLALQVFNWKRYRKRNDPGTPIDAYEYSKGIKIAGKARNVELAVQLFKEAANKGIKTTGTYNALMGAYMFNGLADKCQELFFDMKKDATCVPSIPTYNILISVFGRLMLVDHMEATLREVNRLGLTLNVSTYNNLIAGYISAWMWDDMERVYQTLKSSGVEPNLKTHLLMIRGYANYSNVEKMEEIYSLVRDHVNKKEIHLIKSMICAYCKSSAADRVMKVEGLLELIPEDDYSPWLNVWLIKLYAREDMLLEMENAINEAFEHKTSVVTVGIMRCIIATYFRCNAVEKLDIFVRRAESAGWKSCRSLYHCKMAMHGLLKQFEEMQYVLREMDDVKLYSTKKTLWIMYKAYLNSGQRAMVSKIVGQMFKHGYEVPLDAFPS* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1180 507 PANTHER EXPRESSED PROTEIN 2 506 IPR044179 GO:0003729
Lja1g1180 507 TIGRFAM PPR: pentatricopeptide repeat domain 257 289 IPR002885 -
Lja1g1180 507 MobiDBLite consensus disorder prediction 12 33 - -
Lja1g1180 507 PANTHER OS05G0407900 PROTEIN 2 506 - -
Lja1g1180 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Lja1g1180 507 Gene3D Tetratricopeptide repeat domain 75 249 IPR011990 GO:0005515
Lja1g1180 507 MobiDBLite consensus disorder prediction 7 33 - -
Lja1g1180 507 Gene3D Tetratricopeptide repeat domain 250 398 IPR011990 GO:0005515
Lja1g1180 507 Pfam PPR repeat family 254 302 IPR002885 -
Lja1g1180 507 Pfam PPR repeat family 183 230 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1180 135 397 Miscellaneous Gene Families AT4G11690 24.026 6.76e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1180 - - gmx:100792116 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1180 1 12088983 12091698 Lja1g1180 1 12088983 12091698 ECH