Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1178 ATGAAGAAAGGGAAGGGGAAGAACAACGGCTTGCTGCCGAATTCCTTGAGGATCATCTCTCTTTGCCTCAAAACTGTCTCCACCAACGCCACCACCGTTGCTTCCACCGTACGCTCCGCCGGCGCCTCCGTTGCCGCTTCAATTTCCTCTACTTCCGAGGATCACAAAGACCAGGTAACCTGGGCTGGTTTTGATAAACTAGAGATTGATCAATCTACCTTCAAACATGTCCTGTTACTTGGTTATCTAAACGGATTTCAAGTTCTTGATGTGGAGGATGCTTCTAGGTTCAGTGAGTTAGTCTCGAAGCGCGACGGTCCGGTTTCTTTCTTACAGATGCAGCCGTTTCCTATAGGATGCAATGGCCAAGAGGAGGGGTTCAGAAAGTCGCATCCGTTGCTGTTGGTTGTTTCTGGCGATGATGCTGGTAATGGAAACCAAAACAGTAACAATTTGAGTGGTTTAGGAAGAGATGGTAATGTGGAGACTCTACCTGGGAATAGTGGAAACTATGCGACGGCTGTTCGGTTTTACTCCTTGAAGTCTCAATGTTACGTTCATGTTCTGAGATTCCGAACTTCCGTGTGTATGATCAGATGTAGTTCGCGGATTGTAGCTGTTGGTCTTGCCACCCAAATATACTGCTTTGATGCTGCAACCCTTGAGAATAAGTTCAGTGTTCTAACTTACCCTATTCCCCAGCTTGCTGGACAAGGAAAAACTGGTGTTAATGTTGGTTATGGTCCAATGGCTGTGGGTCCAAGGTGGTTAGCATATGCTTCCAACAGCCTGCTTCCATCAAATTTAGGTTGCTTAAGCCCACAAAACCTTGGTGTTTCTCCTGGAGTTAGTCCATCAACTTCTCCAAGCAATGGTCATTTAGTGGCTCGTTATGCAATGGAGTCCAGTAAACATTTGGCCGCTGGAATAATCAAATACTGTCAAGAGCTGCTTCCTGATGGTTCTGCTTCTCCAATTCCGTTGAATTCAGGTGGGAAAGTCGGCAGGGTTACAGGAATTGATATGGATAATGCAGGCATGGTAGTTGTTAAGGATTTTGTTTCCAGAGTTGTCATTTCACAATTCAAAGCTCACTCAAGTCCTATATCTGCACTATGTTTTGACCCTAGTGGGACCCTTCTTGTCACTGCATCAGTCTATGGGAATAGCATCAATATATTCCGGATAATGCCGTCACGCACATACAAGGGTTCAGGAGTTCCAGGCTACAACTGGAGCTGTTCTCATGTGCATCTTTATAAACTTCATCGTGGAATAACACCAGCTATGATTCAGGACATTTGTTTCAGTCATTTTAGTCAGTGGATTGCTATTGTCTCATCCAAAGGAACTTGTCATCTTTTTGTTTTGTCACCCTTTGGAGGTGATACTGGTTTCCAAGTAATTAGTTCTCAGGGTGAAGAACCCTCCCTACTTCCAGTTTTTTCTCTACCATGGTGGTCTACTTCCTCTTCGGTTTCTCATCAGCAATCATTGCCTCCTCCAGCACCTGTTGTCCTTTCTGTGGCTAGCCGGATAAAATATAGCAGTTTTGGGTGGCTTAATTCAGTTAATAATTCTGCTGCTAATGCGACAGGAAAAGTTTTTGTTCCGTCTGGTGCTATTGCTGCCATCTTTCACAATTCCTTATCTCATTCACAACAACCCATTAACTCAAAGGAAAACCCCTTGGAATATATATTGGTATACACACCTTCAGGTCATGTAGTTCAGCATGAACTTCTGCCATCTGTTGGTTCAGAAACAAGTGATAGTGTTTCAACGAACCAGTCAACTTCACTCCTTCTGCAGGAGGATGAGTTCAGAGTCAAAGTTGAACCTATTCAATGGTGGGACGTATGTAGACGGTCAGAATGGCCAGAAAGAGGGGACCCTTTCAACAATACATTCGATAACGATAAAGAAGGAGGTATGGAGAAAGTTCAAGAGAAAATGTGTTATGGTAACATCCATCGATTGGATTTTCTGGATATAAGTGATGGTATCAGGGAAAAGACGGTTAAACCTTCTAGTGGGAATCCCCAAGATAGGTCTAATAGCTATCTGTCTAATGCAGAGGTTCAAGTGAATTTCAGAGGGCTGCCTATATGGCAAAAGTCCAAGATTGGTTTCTATACAATGAGTTGTGTAAGAACTAGTTTTAATGCTGGTGGAGAGTCTGAAATTGAAAAAGTGTCTGCTAAAGAAGTTGAAATAAGACGGAAGGAGCTGCTGCCTGTTTTTGACCATTTTCACAGCATCAGACCAAGCTGGAACGAGAGAAGCCTTGCTGGGGAAAGATATTTAAGCCCGACGCCTCCTGTTCCCAATCATGCTGAAGACAAGGAAACGGCTGATGTGACGGTTATTTGTCATTCAAATCCAGCTTCATTGAGTTCCACTGAAAGTTCAGAAGGAGGTTCATCAAGAAGAATTGAAAATCTGCTTGACCTGGATCAAGTTGCTTCCAGTTACCAAATGCTTGGTGAAATATACCAAGAAAGAATGGGGGCAATCAATGCTGACCCTTCCTTACAAAACCATTTTGTGATGGAAAGTCCACTTCTATCTGGAAACTCAAAACAAGTTGATTTTCATGTTGACCATTGTGCCACTGCCGGTCCAATATTCCAGGGGAGAAATATGACTTCTGAAGGAAGAGATTCTGCTGGTATCGGGATCAGCGAGGACTCAGCATTAGTCCAGGAACAGGCTTCAGATATAGGTGAATTTGTGGAAGTAGCCATGGTAATGCAATATGCAAGTGTCAAGCTATCTTTCCAGGGTGGCCACTGCAAGACACTGGAGCATGATGGAAGTAATGTGTTAACTGAAGTTGTTGCTGATGATGTTAACAGCAGTAGTAGCCTCCGTGAGAATGCGCAATTGGAGGAGGATGGGGAGGATGATGAAATGCTTGGTGGCATATTTGCCTTTTCGGAAGAAGGTTGA 2952 0.4377 MKKGKGKNNGLLPNSLRIISLCLKTVSTNATTVASTVRSAGASVAASISSTSEDHKDQVTWAGFDKLEIDQSTFKHVLLLGYLNGFQVLDVEDASRFSELVSKRDGPVSFLQMQPFPIGCNGQEEGFRKSHPLLLVVSGDDAGNGNQNSNNLSGLGRDGNVETLPGNSGNYATAVRFYSLKSQCYVHVLRFRTSVCMIRCSSRIVAVGLATQIYCFDAATLENKFSVLTYPIPQLAGQGKTGVNVGYGPMAVGPRWLAYASNSLLPSNLGCLSPQNLGVSPGVSPSTSPSNGHLVARYAMESSKHLAAGIIKYCQELLPDGSASPIPLNSGGKVGRVTGIDMDNAGMVVVKDFVSRVVISQFKAHSSPISALCFDPSGTLLVTASVYGNSINIFRIMPSRTYKGSGVPGYNWSCSHVHLYKLHRGITPAMIQDICFSHFSQWIAIVSSKGTCHLFVLSPFGGDTGFQVISSQGEEPSLLPVFSLPWWSTSSSVSHQQSLPPPAPVVLSVASRIKYSSFGWLNSVNNSAANATGKVFVPSGAIAAIFHNSLSHSQQPINSKENPLEYILVYTPSGHVVQHELLPSVGSETSDSVSTNQSTSLLLQEDEFRVKVEPIQWWDVCRRSEWPERGDPFNNTFDNDKEGGMEKVQEKMCYGNIHRLDFLDISDGIREKTVKPSSGNPQDRSNSYLSNAEVQVNFRGLPIWQKSKIGFYTMSCVRTSFNAGGESEIEKVSAKEVEIRRKELLPVFDHFHSIRPSWNERSLAGERYLSPTPPVPNHAEDKETADVTVICHSNPASLSSTESSEGGSSRRIENLLDLDQVASSYQMLGEIYQERMGAINADPSLQNHFVMESPLLSGNSKQVDFHVDHCATAGPIFQGRNMTSEGRDSAGIGISEDSALVQEQASDIGEFVEVAMVMQYASVKLSFQGGHCKTLEHDGSNVLTEVVADDVNSSSSLRENAQLEEDGEDDEMLGGIFAFSEEG* 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1178 983 SMART WD40_4 413 456 IPR001680 GO:0005515
Lja1g1178 983 SMART WD40_4 182 217 IPR001680 GO:0005515
Lja1g1178 983 SMART WD40_4 355 395 IPR001680 GO:0005515
Lja1g1178 983 Gene3D - 23 491 IPR015943 GO:0005515
Lja1g1178 983 PANTHER AUTOPHAGY-RELATED PROTEIN 18H 6 982 - -
Lja1g1178 983 SUPERFAMILY WD40 repeat-like 175 455 IPR036322 GO:0005515
Lja1g1178 983 Pfam WD domain, G-beta repeat 360 389 IPR001680 GO:0005515
Lja1g1178 983 Pfam Breast carcinoma amplified sequence 3 502 746 IPR022175 -
Lja1g1178 983 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 6 982 IPR045142 GO:0006914
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1178 Lja-Chr1 12072839 12078746 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1178 - - gmx:100785780 1413.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1178 1 12072839 12078746 Lja1g1178 1 12072839 12078746 ECH