Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1174 ATGGCCATCAAAGAGGATGTGGAATATGGTGTGGAGAAAGGAATCAGAGAGCCATTGGTGAAGGATCAGAACAAGCTGCTGAACCATGCAAGAAAAGGGCATCCATGGATTGTTTATTTCACCACATTTGTTGCAGTCTGTGGTTCTTATGAATTTGGGGCTGGTATTGGATACTCGTCTCCTACTCAAGATGCTATCAGGAAGGATCTCAATCTGTCTTTGGCAGAGTACTCCTTGTTTGGCTCCATCGTGACATTTGGAGCAATGATCGGCGCAATCACAAGCGGGCTTATTGCTGATTTTATTGGACGAAAAGGCGCAATGAGAGTATCAAGTGCTTTCTGTGTTGCAGGATGGCTTGTTATTTACTTTTCTCAGGGCCCAGTGCTTTTGGATATTGGGAGGGTAGCAACAGGATATGGAATGGGAGTTTTTTCATATGTGGTTCCTGTCTTCATAGCCGAAATCGCACCAAAAGAACTCCGTGGGGCACTGACTACCTTAAATCAGTTCATGCTCGTTTCTGCCATGTCTGTGTCATTCGTAATTGGAAATGTACTTTCATGGAGGGCTTTAGCATTAACCGGCCTGATTCCCACTGCTGTATTGCTTTTGGGTCTTTTTTTCATTCCAGAGTCCCCTAGATGGCTGGCAAAGAGAGGATGCAGAGAAGATTTTGAGGCAGCACTGCAGATACTTCGCGGCAAAGATGCTGACATATCTCAAGAGGCGGAAGAAATTCAGGATTATATAAAAACTTTAGAACGGCTCCCAAAACCCAAGCTTCTGGATTTGTTTCAGAGAAGAAATTTGCGGTCACTCACTATTGTAGTGGGACTTATGATCTGCCAGCAATTAGGAGGAATCAATGGAGTTTGCTTTTATGCTCGAAGTACTTTTGAGCTAGCAGGTTTTTCTACCACTATTGGGACTATAATATATGCTTGCCTTCAGATTGTGATCACTGGTGTAGGAGCAGCCTTGATAGATAAAGCTGGCAGGAAACCGCTACTACTGTTTGCTGGATTCGGATTGGTTGCAGGATCTATACTTACTGCAGTTGCGTTCTATCTCAAGGTTCAGGAAGTTAGTGTGGGAGCAGTTCCGGCACTTGCTGTAACTGGCATAATGGTCTATGTAGGATCATTTTCAATAGGAATGGGAGCAATTCCATGGGTTATGATGTCTGAGATATTCCCTGTGAATATTAAAGGGCAGGCTGGAAGCTTAGCCACTTTGGTGAACTGGTTTGGTGCATGGTTATGTACCTACACTTTCAACTTTCTCATGAGCTGGAGCTCCTGTGGTACCTTCATTCTTTATGCTGCAATCAATGCAATTGCTATACTATTTATAGTTGTAGTGGTGCCAGAAACCAAGGGTAAAAGCCTGGAACAAATACAAGCAGCCATTAATAAGTAG 1422 0.436 MAIKEDVEYGVEKGIREPLVKDQNKLLNHARKGHPWIVYFTTFVAVCGSYEFGAGIGYSSPTQDAIRKDLNLSLAEYSLFGSIVTFGAMIGAITSGLIADFIGRKGAMRVSSAFCVAGWLVIYFSQGPVLLDIGRVATGYGMGVFSYVVPVFIAEIAPKELRGALTTLNQFMLVSAMSVSFVIGNVLSWRALALTGLIPTAVLLLGLFFIPESPRWLAKRGCREDFEAALQILRGKDADISQEAEEIQDYIKTLERLPKPKLLDLFQRRNLRSLTIVVGLMICQQLGGINGVCFYARSTFELAGFSTTIGTIIYACLQIVITGVGAALIDKAGRKPLLLFAGFGLVAGSILTAVAFYLKVQEVSVGAVPALAVTGIMVYVGSFSIGMGAIPWVMMSEIFPVNIKGQAGSLATLVNWFGAWLCTYTFNFLMSWSSCGTFILYAAINAIAILFIVVVVPETKGKSLEQIQAAINK* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1174 473 TIGRFAM SP: MFS transporter, sugar porter (SP) family 36 467 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g1174 473 ProSiteProfiles Major facilitator superfamily (MFS) profile. 41 460 IPR020846 GO:0022857
Lja1g1174 473 PANTHER SUGAR TRANSPORTER ERD6-LIKE 7 34 472 - -
Lja1g1174 473 PANTHER - 34 472 - -
Lja1g1174 473 PRINTS Sugar transporter signature 396 408 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g1174 473 PRINTS Sugar transporter signature 284 294 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g1174 473 PRINTS Sugar transporter signature 373 394 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g1174 473 PRINTS Sugar transporter signature 132 151 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g1174 473 Gene3D MFS general substrate transporter like domains 32 473 IPR036259 -
Lja1g1174 473 SUPERFAMILY MFS general substrate transporter 33 468 IPR036259 -
Lja1g1174 473 CDD MFS_GLUT6_8_Class3_like 39 466 IPR044775 GO:0008643|GO:0051119
Lja1g1174 473 Pfam Sugar (and other) transporter 73 469 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lja1g1174 473 ProSitePatterns Sugar transport proteins signature 1. 95 112 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja1g1174 473 ProSitePatterns Sugar transport proteins signature 1. 325 342 IPR005829 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1174 Lja-Chr1 12035380 12046839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1174 1 473 Organic Solute Cotransporters AT5G18840 57.917 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1174 K03444 - gmx:100785248 765.377