Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1173 ATGCCAGCTTTGTGTGGCACAGTACTGAATGCCTGCTTGCATTTGAGTGTCTTGCCTCAAGTAAAGATGGCGATCAAAGAGCCACTGGTCCATGCAAGCAGCAAACGGCATCCATGGATTGTTTACTTCACTACATTTGTTGCAGTCTGTGGTTCTTATGAATTTGGAGCTTGTGCTGGATATTCATCTCCTACTCAAGATGCTATCAGGAAGGATCTCAGTCTGTCTTTGGCAGAGTACTCCTTGTTTGGCTCCATCTTGACATTCGGAGCAATGATCGGTGCAATCACAAGTGGGCTTATTGCAGATTTAGTTGGACGAAAAGGGGCAATGAGAGTGTCAAGTGCTTTCTGTGTTGCAGGATGGATTGCTATTTACTTTTCAGAGGGGCCAGTGCCTTTGGACATTGGGAGGCTAGCAACAGGATATGGAATGGGAGTTTTTTCATATGTGGTTCCTGTCTTCGTAGCTGAAATTGCACCAAAAGAACTCCGTGGGGCACTGACAACCCTAAATCAGTTCATGATCGTTACTGGAGTGTCTGTGTCATTCATAATTGGAAATGTCCTTTCATGGAGGGCTTTAGCTTTAATTGGCCTCATTCCCACTGCTGTATTGCTTTTTGGTCTGTTTTTCATTCCAGAGTCTCCTAGGTGGCTGGCAAAGAGAGGACGAGGAAAAGATTTTGAGGTAGCACTGCAGATACTTCGCGGAAAAGATGCTGACATATCTCAAGAGGCGGAGGAAATTCAGGATTATATAATAACTTTAGATCGGCTCCCAAAGCCCAAGCTGCTGGATTTGTTTCAGAGACGATATTTGCGCTCAGTCACTATTTCAGTGGGACTTATGTTCTGCCAGCAATTAGGAGGAATCAATGGAGTTTGCTTCTATACTAGCAGTATTTTTGAGCTGGCAGGATTTTCTACCACCATCGGGACTATAATATATGCTTGTCTTCAGATTGTGATCACTGGTATAGGAGCAGCCTTGATAGATAAAGTTGGCAGGAAACCGCTACTACTGTTAGCTGGATCCGGATTGGTTGCAGGATGTATATTTACCGCAGTTGCGTTCTATCTTAAGGTTCAGGAAGTTAGTCTCGGGGCAGTCCCGGCACTTGCTGTAACTGGCATCCTGGTCTACATAGGATCATTTTCAATAGGAATGGGAGCAATTCCATGGGTTGTGATGTCTGAGATATTTCCTGTCAATATTAAAGGGCAGGCTGGAAGCTTAGCCACTTTAGTGAACTGGTTTGGTGCATGGTTATGTTCCTACACTTTTAACTTTCTCATGAGCTGGAGCTCCTATGGTACCTTCATTCTTTATGCTGCAATAAATGCAGTGGCTATACTGTTTATAATTGTGATGGTGCCGGAAACCAAGGGCAAAAGCCTGGAACAATTACAAGCAGCCATTAATGCGTAG 1431 0.4423 MPALCGTVLNACLHLSVLPQVKMAIKEPLVHASSKRHPWIVYFTTFVAVCGSYEFGACAGYSSPTQDAIRKDLSLSLAEYSLFGSILTFGAMIGAITSGLIADLVGRKGAMRVSSAFCVAGWIAIYFSEGPVPLDIGRLATGYGMGVFSYVVPVFVAEIAPKELRGALTTLNQFMIVTGVSVSFIIGNVLSWRALALIGLIPTAVLLFGLFFIPESPRWLAKRGRGKDFEVALQILRGKDADISQEAEEIQDYIITLDRLPKPKLLDLFQRRYLRSVTISVGLMFCQQLGGINGVCFYTSSIFELAGFSTTIGTIIYACLQIVITGIGAALIDKVGRKPLLLLAGSGLVAGCIFTAVAFYLKVQEVSLGAVPALAVTGILVYIGSFSIGMGAIPWVVMSEIFPVNIKGQAGSLATLVNWFGAWLCSYTFNFLMSWSSYGTFILYAAINAVAILFIIVMVPETKGKSLEQLQAAINA* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1173 476 TIGRFAM SP: MFS transporter, sugar porter (SP) family 50 469 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g1173 476 Gene3D MFS general substrate transporter like domains 33 475 IPR036259 -
Lja1g1173 476 CDD MFS_GLUT6_8_Class3_like 42 469 IPR044775 GO:0008643|GO:0051119
Lja1g1173 476 PANTHER - 37 475 - -
Lja1g1173 476 ProSitePatterns Sugar transport proteins signature 1. 98 115 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja1g1173 476 ProSitePatterns Sugar transport proteins signature 1. 328 345 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja1g1173 476 PRINTS Sugar transporter signature 376 397 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g1173 476 PRINTS Sugar transporter signature 135 154 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g1173 476 PRINTS Sugar transporter signature 399 411 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g1173 476 PRINTS Sugar transporter signature 287 297 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g1173 476 ProSiteProfiles Major facilitator superfamily (MFS) profile. 40 463 IPR020846 GO:0022857
Lja1g1173 476 PANTHER SUGAR TRANSPORTER ERD6-LIKE 7 37 475 - -
Lja1g1173 476 SUPERFAMILY MFS general substrate transporter 35 470 IPR036259 -
Lja1g1173 476 Pfam Sugar (and other) transporter 52 472 IPR005828 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1173 Lja-Chr1 12011858 12016855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1173 16 475 Organic Solute Cotransporters AT5G18840 58.887 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1173 K03444 - gmx:100785248 780.4