Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1171 ATGATGACAGATGAAGAACTGATACAGAAGCTGGACGAGTCTACCAAAAACGCCCAGCATCACCAATTGGAGACTCTCCGTTCAATCCTTCTTCACAATGGTAATGTAAGCTATCTCAAATCCTTCAAACACAAAGGGGACCCTTCTGATCCTGCAACTTTCACAAGGGTTGTGCCTTTGTCCTCCTATGAAGATTATGCTGACTATATCAACCAGATGGCAGATGGAAAAGAAGACAATCCTCATCATCATCACCCTCTTCTCTCTGTTGATCCTCCCCTCTGCTTCTTCTACAGCTCAGGAACAACCTCTATGAAACCAAAATTGATCCCTTACTATGATTCAGACCTTTCCAAAGCTGCCTCCTTTATCGGTCACCGCGGCAGCATTGCTGTTCATCAGAGATTGTTTCCTCCAAAGCCTGAAGTCAACAAGATCCTCTGGTTTCTCTATGCTGACAACATTACTTATACTAAATGTGGCCTGAAGGTTATGGCGGCCTCTACATATTATTTTCAAAGTGGTAGTGCCACCCCTCAGCAACTTGCTGTATTTTCCAGTCCCTTAGAAGTTATTCTTGGATCTCATGTGGAGCATCAAGTGTATTGCCACCTTCTATGTGGTCTTAGGAATCTGGATGTTATAGATGGAATTATGGCCCCTTATGCCATAGGTTTGGTTAAAGCATATGGTCTTCTAGAGTCCAAGTGGGAGCAACTATGTGATGATCTTGAACTTGGGATTCCAAGTTCGGCAATTTCAGATGTGGCAATGAGGGAAGCTGTGATCAATAAACTTGGTGGGGCTCAGCCAGAACTTTCAAAAAGAATAAGGTTAGCTTGTGAAGGTAAAAACTGGGAAGGGATTATACCTAGGTTGTGGCCGAATATTCGTTATATTAGGACTGTAACCACGGGAAGCATGAAACAGTACTACCAAAAGCTCAAGCACTATGCAGGAGAGGTTCCTATTCTAGGAGGAGATTACTTTGCTTCAGAATGCACCGTTGGTATAAATTTAGACATACTGCAACCTCCTGAGACAACACGATTTGTTATGCTTCCTACTGCTGCCTACTTTGAGTTTCTTCCATTTGACATGAATGAGGATGTGGATGATGATGCTGGTGAAGAAACAGTAGACCTTAGCAGTGTGGAGGTTGGGAAGATGTATGAAGTGGTTGTGACTACTTATCGAGGATTCTATCGCTACCGGTTGGGCGACATAGTGAGAGTTGTTGGCTTCCATAATTCATCTCCACAAGTGGAATTTGTGATGAGGGCACCTAAAAGTCCTTCTGAGATTCTGACAGAGAAAGACTTGATTTTAGGAGTTGAAAACTTTCAACTTGCACTGAGTGGTGCTATGAGAATTGAGATTGTTGAGTATGCAAGTTTCTTGGATCAGGAGTCAAGGCCAAAGCAGTTGAATGTGTTTGTGGAAATCCAAGATGAGTCTAGTTTTCTGGAGGATAAAAGGGAGGAATCAGTTGCCATTTTCAAAAGTTGTGTTTCCTCTCTTGAGAGTGGATTCGGGGCTCTGTATAAGGTGCACAAGGATAAAGGTCACACAGGGAACTTAGTGATATTCATCATAAGGCCTGGAGCTTTTGATCAATTATCAGAATTAGCCATTAAGAGGGGAGCATCAGCTAGTCAATATAAGCCGCCCAAGATTATAAGGAATTATGAAGCTGTCAAATTCTTGAAACAATTAGCTTTTGTGACAATATCACTGGATGACTAA 1746 0.4233 MMTDEELIQKLDESTKNAQHHQLETLRSILLHNGNVSYLKSFKHKGDPSDPATFTRVVPLSSYEDYADYINQMADGKEDNPHHHHPLLSVDPPLCFFYSSGTTSMKPKLIPYYDSDLSKAASFIGHRGSIAVHQRLFPPKPEVNKILWFLYADNITYTKCGLKVMAASTYYFQSGSATPQQLAVFSSPLEVILGSHVEHQVYCHLLCGLRNLDVIDGIMAPYAIGLVKAYGLLESKWEQLCDDLELGIPSSAISDVAMREAVINKLGGAQPELSKRIRLACEGKNWEGIIPRLWPNIRYIRTVTTGSMKQYYQKLKHYAGEVPILGGDYFASECTVGINLDILQPPETTRFVMLPTAAYFEFLPFDMNEDVDDDAGEETVDLSSVEVGKMYEVVVTTYRGFYRYRLGDIVRVVGFHNSSPQVEFVMRAPKSPSEILTEKDLILGVENFQLALSGAMRIEIVEYASFLDQESRPKQLNVFVEIQDESSFLEDKREESVAIFKSCVSSLESGFGALYKVHKDKGHTGNLVIFIIRPGAFDQLSELAIKRGASASQYKPPKIIRNYEAVKFLKQLAFVTISLDD* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1171 581 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.6-RELATED 2 577 - -
Lja1g1171 581 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 2 577 IPR004993 -
Lja1g1171 581 Pfam GH3 auxin-responsive promoter 11 562 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1171 Lja-Chr1 11985065 11988006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1171 8 576 EF-hand Containing Proteins AT1G23160 31.615 3.06e-91 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1171 K14487 - gmx:100786829 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1171 1 11985065 11988006 Lja1g1171 1 11985065 11988006 ECH