Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1156 ATGGCAAATCTCTTGCCATCATTCTCATTCTCAGTGAGTCCTCAGAATCAGCACCAAAACAGAACAAAATGGTCCTTTTTTCACAAACCTTGCATCCAAAGGATGCAGCAGCAACTTGTGAGCAGGAATTTGCAAGATCTCACCAACCCCTTTTCCCAGAATCTCATTTCCAAACTGTGCGCCACATCACGGTTGTCTGTGGAGGAAACCGAGCAGAAAGTCACTACCTTTATCCAAGCTCAAGATCTAAAAAAGGCAGTACCGTATTTGTTCAGGACAGGAATCAGTGAAGGTTTGGTTAAGGTTTATGTCACAAAGAAAAAGGTTAGTTCTTTTGTGTATATTGAAGTTTCTTCTTTGGAATTTGGTGAAGGGGAAGGAACACCTGTGTTGTGTTGGGGTGTGTACAGAGCTGATTCATCGAGTGTAGATGCAGGAACAGGGATGAATGTGACCCCCCTGGTGAAAATTTCTCAGGGGAAGTTTACTGTTGAATTGGAATTTGATGCAGAACAAGTTCCTATGTACTTGTCTTTTTTGTTGAGATCTTCGTTTGATTCCGGGTTGGAAATCAGAAGCCACTTGAAAAGGAATTTCTGTGTGCCTGTTGGTTTTCTTCCTGGGTACCCTGCTCCTCTGGGGTTCTCATTTTCCCCTGATGGGTCTATGAATTTTGCTGTTTTCTCAAGACATGCAGAGGGTGTGGTTTTGTGTTTGTATGATGATGACAGTGGTGTGGAGAAGCCTGCTTTGGAGCTTGATCTGGATCCTTATGTCAATAGGACAGGCGACATCTGGCATGTCGCGTTTGAGAGTTCCTGGACTTTTGTGAGATACGGTTATCGCTTCCGAGGAGCTCTTGTTCACAGGAACAAGGATGGTGGTTATGAAGATGAGGGTGTTGTTTTGGATCCATATGCTAGGATCATTGAGAATTTTTATCCTAGTGGTGTTGGATCAATGAAGAATCTTGGAAGGTTGGGACAGGAACCTGCTTTTGACTGGGGTGATGATTACCATCTGGATTTGCCCATGGAGAAACTAGTGGTGTATAGGTTGAATGTGAAGCGATTCACAGAGCACGAGTCCAGCCAACTCCCGAGTGATTTAGCTGGGACCTTCTCTGGTTTGGCAAAAAAGCTGCAGCATTTTAAGGATCTGGGTGTGAATGCTGTTCTGTTGGAGCCAGTTTTCACATTTGATAAGGAGAAAGGACCATATTTTCCTTGCCATTTTTTTGCTCCGACGAGTGCTTATGGACCATCTAGTGGTCCTGTATCTACCATCACCTCTATGAAAGAGATGGTGAAGGCTATGCATGCCAATGGGATAGAGGTTCTCATGGAAGTTGTTTTCTCCAACACTGCTGAGATGGCTGCCCTGCAAGGAATTGACGACTCATCCTACTATTATGATAATGGAGTTGGTAATCTGAAGTTGCACAATGCTTTGAATTGTAACTTTCCTATAGTGCAGAATTTGATTCTAGATAGCCTTCGGCATTGGGTAACTGAGTTTCACATTGATGGCTTCTCTTTCATAAATGCTTCACATCTGTTGAAAGGGTTTCATGGAGAATACTTGTCTCGGCCGCCATTGGTTGAAGCAATTGCTTTTGACCCTGTACTCTCCAAGACTAAAATCGTTGCAGATTGCTGGGATCCTCATGGCATAGCAGTAGCAAAGGAAAATCCGTTTCCTCATTGGATGAGATGGGCTGAAATAAATACAAAATTTTGTGATGATGTTAGAAATTTTTTGAGGGGTGAAAACCTTCTTAGCAACCTTGCAACCAGACTTTGTGGAAGTGGTGACATGTTTTCTGATGGAAGAGGCCCTGCATTCTCTTTTAATTACATTTCAAGGAACTCTCGACTTTCTCTGGTGGACTTGGTCAGCTTCAGCAATGGTGATCTAGCTGCAGAGTTAAGTTGGAATTGTGGAGAAGAAGGACCTACTAATAACACCACTGTCCTTGAAAGACGACTCAAACAAATCCGCAATTTCCTTTTCATCTTGTTTGTGTCATTAGGAGTGCCTGTTCTGAACATGGGAGATGAGAGTGGTCAATCTTCTGGTGGTTCTCCTGCATATGGTGACATAAAACCTTTCAATTGGAGTGCTTTGAAAACAGGTTTTGGTAAACAAACCATGCAATTCATTTCATTCTTAACTTCACTGAGAATAAGGAGGAGTGATGTTCTTCAGAGTAGGTGTTTCTTAAAAGAAAAAAACATTGAATGGAGTGGAAGTGATCAGGCTCTCCCAAAGTGGGAAGACCCATCCTGCAAGTTCTTGGCCATGACTTTGAAGGCGGAAAAATTGGAGTTCCCAGAGAACTCTACTATTTGTGATGATGGATCAGGGGATTTGTTTATTGCTTTCAATGCAGATGATAAACCAGAAACTGTAGTTTTGCCCCTGCTTCCAGAAGGGATGTCATGGTACCGTTTAGTTGATACAGCTCTTCCATTTCCAGGCTTTTTCTCCACAAATGGTGAATTTGTCCCTGAGCAGGCGTCAGGTTTAACTGTTTATCAAATGAAGTCTTACAGTTGCACATTGTTTGAGGTAAAACACAGTACCAGTTAA 2592 0.4263 MANLLPSFSFSVSPQNQHQNRTKWSFFHKPCIQRMQQQLVSRNLQDLTNPFSQNLISKLCATSRLSVEETEQKVTTFIQAQDLKKAVPYLFRTGISEGLVKVYVTKKKVSSFVYIEVSSLEFGEGEGTPVLCWGVYRADSSSVDAGTGMNVTPLVKISQGKFTVELEFDAEQVPMYLSFLLRSSFDSGLEIRSHLKRNFCVPVGFLPGYPAPLGFSFSPDGSMNFAVFSRHAEGVVLCLYDDDSGVEKPALELDLDPYVNRTGDIWHVAFESSWTFVRYGYRFRGALVHRNKDGGYEDEGVVLDPYARIIENFYPSGVGSMKNLGRLGQEPAFDWGDDYHLDLPMEKLVVYRLNVKRFTEHESSQLPSDLAGTFSGLAKKLQHFKDLGVNAVLLEPVFTFDKEKGPYFPCHFFAPTSAYGPSSGPVSTITSMKEMVKAMHANGIEVLMEVVFSNTAEMAALQGIDDSSYYYDNGVGNLKLHNALNCNFPIVQNLILDSLRHWVTEFHIDGFSFINASHLLKGFHGEYLSRPPLVEAIAFDPVLSKTKIVADCWDPHGIAVAKENPFPHWMRWAEINTKFCDDVRNFLRGENLLSNLATRLCGSGDMFSDGRGPAFSFNYISRNSRLSLVDLVSFSNGDLAAELSWNCGEEGPTNNTTVLERRLKQIRNFLFILFVSLGVPVLNMGDESGQSSGGSPAYGDIKPFNWSALKTGFGKQTMQFISFLTSLRIRRSDVLQSRCFLKEKNIEWSGSDQALPKWEDPSCKFLAMTLKAEKLEFPENSTICDDGSGDLFIAFNADDKPETVVLPLLPEGMSWYRLVDTALPFPGFFSTNGEFVPEQASGLTVYQMKSYSCTLFEVKHSTS* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1156 863 Gene3D Glycosidases 329 743 - -
Lja1g1156 863 Gene3D - 744 863 IPR013780 -
Lja1g1156 863 SMART aamy 352 730 IPR006047 GO:0005975
Lja1g1156 863 PANTHER GLYCOGEN DEBRANCHING ENZYME 61 861 - -
Lja1g1156 863 PANTHER ISOAMYLASE 2, CHLOROPLASTIC 61 861 - -
Lja1g1156 863 SUPERFAMILY E set domains 207 340 IPR014756 -
Lja1g1156 863 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 212 307 IPR004193 GO:0004553|GO:0005975
Lja1g1156 863 Pfam Alpha amylase, catalytic domain 372 458 IPR006047 GO:0005975
Lja1g1156 863 CDD AmyAc_plant_IsoA 344 736 IPR044096 GO:0019156|GO:0019252
Lja1g1156 863 SUPERFAMILY Glycosyl hydrolase domain 743 857 - -
Lja1g1156 863 Gene3D Immunoglobulins 200 322 IPR013783 -
Lja1g1156 863 SUPERFAMILY (Trans)glycosidases 331 730 IPR017853 -
Lja1g1156 863 CDD E_set_GDE_Isoamylase_N 212 352 IPR044505 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1156 Lja-Chr1 11863204 11866180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1156 33 863 Glycoside Hydrolase AT1G03310 56.471 0.0 908
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1156 K01214 - gmx:100777953 1249.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1156 1 11863204 11866180 Lja1g1156 1 11863204 11866180 ECH