Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1144 ATGAAGCTCGTCAGGTTTCTCATGAAGTTGAACAACGAAACTGTTTCCATCGAGCTTAAGAACGGGACTATTGTCCATGGCACCATTACAGGTGTTGATATCAGTATGAATACACATTTGAAAACAGTTAAACTAACCCTGAAAGGGAAAAATCCAGTTACTTTGGATCATCTCAGTGTAAGGGGCAACAACATTCGTTATTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTACTGGTTGAAGAGACCCCTAGGGTCAAACCTAAGAAGCCAACTGCTGGGGGGAAGCCTTTGGGACGAGGACGGGGGCGTGGACGTGGACGCGGCCGAGGTCGTGGTGGCCGTTAA 351 0.4672 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGGKPLGRGRGRGRGRGRGRGGR* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1144 116 SUPERFAMILY Sm-like ribonucleoproteins 4 115 IPR010920 -
Lja1g1144 116 SMART Sm3 5 70 IPR001163 -
Lja1g1144 116 MobiDBLite consensus disorder prediction 102 116 - -
Lja1g1144 116 Gene3D - 1 49 - -
Lja1g1144 116 Gene3D - 50 82 - -
Lja1g1144 116 MobiDBLite consensus disorder prediction 82 116 - -
Lja1g1144 116 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 111 IPR027141 GO:0006396
Lja1g1144 116 Pfam LSM domain 5 69 IPR001163 -
Lja1g1144 116 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 1 111 - -
Lja1g1144 116 CDD Sm_D1 2 93 IPR034102 GO:0000387
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1144 Lja-Chr1 11740157 11743720 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1144 K11087 - cpap:110814760 194.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1144 1 11740157 11743720 Lja1g1144 1 11740157 11743720 ECH