Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1138 ATGGAAGCAGCAACGCGATTCTCTCCGAATCACTTCCTCCCCCACCACCACACCTTCCAAACAAAACCCAACGCCCTTCCACGACGAACACCACCACACAGAATCACCTTCCACCGAATCGGAACACCTAGGGTTTCCCTTCTCAACAATTTCCCTTCCCTCAACCGCTCTTTGTCTCACCGGAGGACTCTCTCCGTCAACTTCTTCGACCGGCTCCGGAGCGACTCTGTTGAAGCCGAATCTCCGAATGAGGAAGTTGTTCTGCTGCCGAGTCGCGGCGGCGACGGAGGGGAAGCGGTTGTGCCGACGGGAGATCTTCAGTTGAAACCTAGAATGTTTAGAAATAGGTTTCTGAACTTCGTGCGGTTCGGGTCTGTGATTAACGGTGCTGCTGAGTCGTTTTTCAAGAGCGAGATTCGGAGGAGGCTGTTTGTGACTGCTGTGTTGATTGTGATAAGCCGTGTTGGGTATTTCATTCCTCTTCCTGGGTTTGACAGGAGGTTGATACCGCAAGATTACATGAGCTTTGTTTCTGGATCTTCTGTTGATGAACTTGGTGACTTCTCTTCTGAGCTCAAGCTATCGCTTTTCCAGCTTGGAATCAGTCCTCAGATAATAGCTTCCATTATCATGCAGGTGCTCTGTCATGTTGTTCCTTCTCTAGTAAAGCTGAGGAAAGAAGGTCTGGATGGGCAGGAGAAGATTAAGAGTTATATATGGTGGATGTCGTTTGGCTTTGCGATTTTGGAAGCTCTAATAGTTTCTTGCTACTCACTTCAATACTCAATTTATGCTGCTAGTCATAGGGTCAAACATGTCATGGTGACAAGTTCGTTGTTGGTTTGTGGTGCAATGACTACTACATGGATATGTGATACCATATCAGAATCTGGATTTGGTCAGGGTTCGTCTCTTATCATATGTGTCGGAATACTGACGGGTTACATGGAAACATTGCACAAAATGCTTACTCAGCTTTCAGTGAGTTCTGTGAGTTGGTTGCCATATGTGCTTGCAGTATTGGGTATCTTCACCACAGTCACTATGTGGGCAGTTGTAGTAACTGAAGGTTGCAGGAAAGTAAAGCTTCAGTACTATGGTTTTAAACTTGCTTCTGCTGCAAGGGAGCAATCACCAATTACTGAAGTGGAGCCCTATATTCCTTTCAATATAAATCCAGCAGGGATGCAACCTGTTCTTACCACCTCTTACCTCTTGGCATTTCCAAGTATTGTCGCAGGTCTGCTTCAGTCACCTTTTTGGGAGCATGTCAAGGAAATGTTGAACCCTGAAACTTCAATTGGTGCTGAGCCGTGGGTCTACTATTCCATATATGCATTTTTTGTATTCCTGTTCAACATATTTGATATTGCTAACTTGCCAAAGGAAATTGCTGATTACTTAAATAAGATGGGTGCAAGAATACCCAACATAAAGCCTGGGAAGGCTACTATAGAATACCTCTCAAAGGTTCAGGCATCCACACGATTTTGGGGAGGCCTACTATTAAGTGTTTTGGCCACTACATCAACTGTTCTGGACCACTATTTGCGGCGTATCAATGCTGGATTTGCTATTGGTTTCACATCAGTTCTAATTATTGTGGGTTCCATTATTGAACTTAGAAGATCGTATCAAGCATATAATGTGATGCCAAGCTTAAGCAATGCTTTGAGACGTTATGGTGTATAA 1692 0.4456 MEAATRFSPNHFLPHHHTFQTKPNALPRRTPPHRITFHRIGTPRVSLLNNFPSLNRSLSHRRTLSVNFFDRLRSDSVEAESPNEEVVLLPSRGGDGGEAVVPTGDLQLKPRMFRNRFLNFVRFGSVINGAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYMSFVSGSSVDELGDFSSELKLSLFQLGISPQIIASIIMQVLCHVVPSLVKLRKEGLDGQEKIKSYIWWMSFGFAILEALIVSCYSLQYSIYAASHRVKHVMVTSSLLVCGAMTTTWICDTISESGFGQGSSLIICVGILTGYMETLHKMLTQLSVSSVSWLPYVLAVLGIFTTVTMWAVVVTEGCRKVKLQYYGFKLASAAREQSPITEVEPYIPFNINPAGMQPVLTTSYLLAFPSIVAGLLQSPFWEHVKEMLNPETSIGAEPWVYYSIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNIKPGKATIEYLSKVQASTRFWGGLLLSVLATTSTVLDHYLRRINAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1138 563 PRINTS Preprotein translocase SecY subunit signature 527 545 - -
Lja1g1138 563 PRINTS Preprotein translocase SecY subunit signature 439 461 - -
Lja1g1138 563 PRINTS Preprotein translocase SecY subunit signature 394 413 - -
Lja1g1138 563 PRINTS Preprotein translocase SecY subunit signature 143 161 - -
Lja1g1138 563 PRINTS Preprotein translocase SecY subunit signature 296 319 - -
Lja1g1138 563 PRINTS Preprotein translocase SecY subunit signature 194 214 - -
Lja1g1138 563 PRINTS Preprotein translocase SecY subunit signature 235 258 - -
Lja1g1138 563 PRINTS Preprotein translocase SecY subunit signature 270 295 - -
Lja1g1138 563 Pfam SecY 195 541 IPR002208 GO:0015031|GO:0016020
Lja1g1138 563 Gene3D SecY subunit domain 127 553 IPR023201 -
Lja1g1138 563 MobiDBLite consensus disorder prediction 1 32 - -
Lja1g1138 563 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY2, CHLOROPLASTIC 117 562 - -
Lja1g1138 563 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 117 562 IPR002208 GO:0015031|GO:0016020
Lja1g1138 563 SUPERFAMILY Preprotein translocase SecY subunit 123 548 IPR023201 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1138 58 563 Miscellaneous Gene Families AT2G31530 76.367 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1138 - - gmx:100803256 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1138 1 11681876 11689049 Lja1g1138 1 11681876 11689049 ECH