LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g1129	ATGGCGATGAGTGTTCAGCTATCATCTTCATCAGGCTTGTGGGTACCCAACTCTCCACACCGTGTTCCCAGCCGAGGCAAACCCGGGTCCCCATCAGCTCTCGCTGCCACACCACCAACACTCTCATCTCAACCTCCCACCATTCAGATAGTAGGGCTGAGAGGCCCTAGTTGGAGTGAAAATGGAATTGCCAATCCCAATAGCAATACATTTGATGGCTGTGAAGGAGAGAATAATCTTTGGTCTGAACTTGACACTGATCTTTATCATTGGACAAAGGCCTTACGCCCCGTGCAGTGGTTTCCTGGACATATTGCAAAAGCAGAAAAAGAGCTGAAGGAGCAGCTCAGGTTGATGGATGTTGTGATAGAGGTGCGGGACGGGCGAATTCCTATGTCCACAACTCATCCTCAGATGGATCTATGGCTTGGTAATAGAAAGAGAATTCTGGTTTTAAATAGAGAAGACATGATATCAACTGAAGACCGTAATGCTTGGGCAGAGTATTTTACTAGGAATGGCACAAAGGTTGTCTTCTCCAATGGGCAGCTTGGAATGGGCACAATGAAGCTAGGCCGGTTAGCAAAGGAATTAGCAGCTAATGTAAATGTTAAACGCAGAGCCAAAGGACTACTTCCTCGTGCGGTTCGAGCTGGAATAGTTGGATATCCTAATGTTGGAAAATCATCTTTGATCAACCGTTTGTTGAAGCGAAGAATGTGCCCAGCAGCTCCTAGGCCAGGAGTAACTAGAGAATTGAGGTGGATTCGTTTTGGGAAAGATCTTGAACTTCTGGATTCTCCTGGGATTCTCCCGATGCGAATCAGCGACCAGTCATCAGCTATAAAACTTGCCATATGTGATGACATTGGAGAGAGGTCCTATGATGTGACTGATGTTGCTGCAGTTCTTGTACAGATGCTAACAAAGCTTCCTGCAGTAGGTGGAGATGCTCTTCGTAAGCGATACAAGATTAATGTAGATAGTCAGTGTGGTAAAACGTTCGTAGAGAAGCTGGCGCTCCAATTGTTCAACGGAGATGTTCACCAAGCATCATTTCGGGTTTTGTCAGATTTTAGAAAAGGTAAGTTTGGTTGGACTGCACTGGAGAGGCCTCCTAGGTGA	1125	0.4613	MAMSVQLSSSSGLWVPNSPHRVPSRGKPGSPSALAATPPTLSSQPPTIQIVGLRGPSWSENGIANPNSNTFDGCEGENNLWSELDTDLYHWTKALRPVQWFPGHIAKAEKELKEQLRLMDVVIEVRDGRIPMSTTHPQMDLWLGNRKRILVLNREDMISTEDRNAWAEYFTRNGTKVVFSNGQLGMGTMKLGRLAKELAANVNVKRRAKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELRWIRFGKDLELLDSPGILPMRISDQSSAIKLAICDDIGERSYDVTDVAAVLVQMLTKLPAVGGDALRKRYKINVDSQCGKTFVEKLALQLFNGDVHQASFRVLSDFRKGKFGWTALERPPR*	375

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g1129	374	PRINTS	GTP1/OBG GTP-binding protein family signature	264	279	IPR006073	GO:0005525
	Lja1g1129	374	PRINTS	GTP1/OBG GTP-binding protein family signature	218	238	IPR006073	GO:0005525
	Lja1g1129	374	Pfam	50S ribosome-binding GTPase	218	288	IPR006073	GO:0005525
	Lja1g1129	374	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	104	287	IPR027417	-
	Lja1g1129	374	MobiDBLite	consensus disorder prediction	1	46	-	-
	Lja1g1129	374	PANTHER	DAR GTPASE 3, CHLOROPLASTIC	41	374	-	-
	Lja1g1129	374	Gene3D	-	276	364	IPR023179	-
	Lja1g1129	374	Gene3D	-	98	271	IPR027417	-
	Lja1g1129	374	PANTHER	MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1	41	374	-	-
	Lja1g1129	374	MobiDBLite	consensus disorder prediction	1	17	-	-
	Lja1g1129	374	TIGRFAM	GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF	98	370	IPR019991	-
	Lja1g1129	374	CDD	YlqF	100	271	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g1129	Lja-Chr1	11613253	11617873	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g1129	K19828		-	gmx:100784201	625.55