Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1107 ATGGACGAAGAAAGGGAACCGGAATCCACCAAAGACGTTGAAGTTGCTCCGGCTCTCATCGCCGTCCACCCCGACCACCACTCCGTCGCCGTCGCCGTCGGACCGGACCTCCGCGTCTTCGACCTCATTGCCGGTTCTGCAGCTTCTCTAGTCGACGACTCTGTCTCCGGCGGCCAACAACAACCACCCTTCCACAAGGACAGCATCAGAGCCATTCGCTTCGCCGCCAACGGAAAACTCTTCGTCTCCGCCGGTGATGATAAAACCGTCAAGATTTGGTCTCCGCCGCAATCCTGGCGCTGCATCGCTACCGTGTTATCGGAGAAGAGAGTCACTGCGGTTGCCATAAGCAATGATGGATGTTACGTGTGCTTCGCTGATAAATTCGGAGTTGTTTGGGTTGTGGATCTTGAACAACCATTAGGTGATAAGAAACCAACACCGCTTCTATCTCACTATTGCAGTATCATCACTAGCTTGGAGTTTTCGCCGGATGGTCGGTTTATTTTAAGTGCTGATCGAGATTTCAAAATTCGGGTTACTTGTTTTCCCGACAAACCGTTAAATGGAGCTCACGAGATACAAAGTTTCTGTCTTGGTCATACAGAGTTTGTCTCCTGCCTGGCCTTTGTTCCTGCTAAGGAATGCCCTCAAAGCCTACTTCTTTCTGGCAGTGGAGATTCCACGGTTCGGCTATGGGATATCTCCTCCGGAGCACTCCTAGATACTTGTGAGGTTGCAAATAAGGCAGGACTTCTAGAATCTAATGGTAATGCGGAGGAGCTTGGCCATGCTGTTACTAATTTATGCACCACACATGATGGTTTGCTTGTTGCAGCTGCAATTCAGAGCTTGCAAGGAATAGTATTGATGAGTTGCAATAGTTCTTCGCAAAAACTTTCCGTTATTAAGGTGGTTTCTTTTGCGGGAGATGGCTTTGTCCCTACCTGCCTGGGAAACATCCCTTCTACAGGGAAATTGTGGATGGTGACCGGTGTTTCTAGTTTACCTGGTTCCAATTACCCCTCTGTGGCTCGCGTCCGAGTAATTTCTGGTATTGATGGTGACCAAGAGCCTGTTGTTCTGGGAGATGATAATATACCTGGAGGTGAAAAGCTACTACAAACATTGCAAGGAACTGCATCTGTTGATGATAATGCTTTTTTGGCCGCAGCTGAAGCTGTCAAAACAGCAATGTGCAACCTATTAGTAAAAAAGCAATACCCTGCAGAGAATAGGGAATATAGGAAGAAGACCAGAAATGATAGAAAACACAAGGGGTAG 1284 0.4798 MDEEREPESTKDVEVAPALIAVHPDHHSVAVAVGPDLRVFDLIAGSAASLVDDSVSGGQQQPPFHKDSIRAIRFAANGKLFVSAGDDKTVKIWSPPQSWRCIATVLSEKRVTAVAISNDGCYVCFADKFGVVWVVDLEQPLGDKKPTPLLSHYCSIITSLEFSPDGRFILSADRDFKIRVTCFPDKPLNGAHEIQSFCLGHTEFVSCLAFVPAKECPQSLLLSGSGDSTVRLWDISSGALLDTCEVANKAGLLESNGNAEELGHAVTNLCTTHDGLLVAAAIQSLQGIVLMSCNSSSQKLSVIKVVSFAGDGFVPTCLGNIPSTGKLWMVTGVSSLPGSNYPSVARVRVISGIDGDQEPVVLGDDNIPGGEKLLQTLQGTASVDDNAFLAAAEAVKTAMCNLLVKKQYPAENREYRKKTRNDRKHKG* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1107 427 ProSitePatterns Trp-Asp (WD) repeats signature. 221 235 IPR019775 -
Lja1g1107 427 Gene3D - 58 313 IPR015943 GO:0005515
Lja1g1107 427 SUPERFAMILY WD40 repeat-like 20 280 IPR036322 GO:0005515
Lja1g1107 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 243 IPR001680 GO:0005515
Lja1g1107 427 Pfam WD domain, G-beta repeat 198 234 IPR001680 GO:0005515
Lja1g1107 427 Pfam WD domain, G-beta repeat 64 94 IPR001680 GO:0005515
Lja1g1107 427 Pfam WD domain, G-beta repeat 151 180 IPR001680 GO:0005515
Lja1g1107 427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 198 238 - -
Lja1g1107 427 PANTHER WD40 REPEAT PROTEIN 4 18 425 IPR028884 GO:0036265
Lja1g1107 427 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 26 419 IPR028884 GO:0036265
Lja1g1107 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 65 94 IPR001680 GO:0005515
Lja1g1107 427 SMART WD40_4 143 182 IPR001680 GO:0005515
Lja1g1107 427 SMART WD40_4 190 234 IPR001680 GO:0005515
Lja1g1107 427 SMART WD40_4 98 136 IPR001680 GO:0005515
Lja1g1107 427 SMART WD40_4 56 94 IPR001680 GO:0005515
Lja1g1107 427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1107 Lja-Chr1 11034669 11037531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1107 79 255 Miscellaneous Gene Families AT5G08390 23.729 7.76e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1107 K15443 - gmx:100809122 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1107 1 11034669 11037531 Lja1g1107 1 11034669 11037531 ECH