Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1106 ATGTCTGGACTGATTGAAGGACTTCCTGATGCTGTTGCAATTAGGTGCCTTGCACGTGTTCCGTTCTACCTCCACCCAAAGTTAGAACTTGTCTCTCGATCTTGGCAAGCTGCCATTCGTAGCCCTGAACTATTTAAAGCTCGGAAGGAGGTGGGCTCATCTGAGGAGCTGCTGTGTGTCTGTGCTTTTGATCCAGAGAACTTATGGCAGATGTATGATCCTCTAAGAGATCTCTGGATTACACTTCCTGTTCTTCCCTCAAAGATCAGACACCTTTCACACTTTGGTGCTGTTTCCACTGCTGGAAAGTTGTTTGTGATTGGTGGTGGAAGTGATGCTGTTGATCCTCGGACTGGTGACCAATATGGTTGTTTTGCAACCGATGAAGTATGGTCATATGACCCTGTAGTCCGGCAGTGGTCCCTTCGGGCTTCAATGCTTGTTCCCCGTTCTATGTTTGCATGCTGTGTTCTTAATGGGAAAATTGTTGTGGCTGGGGGCTTCACTAGCTGTAGAAAATCAATATCTCAAGCAGAAATGTATGACCCTGAGAAGGATGTTTGGATCCCAATGCCTGATCTTCACCGCACTCATAACTCAGCCTGTTCAGGAGTAATGATTGGTGGAAAGGTGCATGTACTGCACAAGGATATGTCAACGGTTCAAGTTTTAGACAACGCAGGTGCAGGGTGGATCGTTGAGGATTGTGGGTGGTTCCAAAGTCCAATGGCGGTTGTCCAGGATGCACTTTATGTGATGAGCCATGGACTTATCCACAAGCAGGAGAAAGACGTGAGAAAGGTTGTAGGTTCAGCATCCGAGTTTCGTAGGAGAATTGGGTTTGGAATGATTGGCCTAGGTAATGAGTTATACGTGATTGGAGGCTTCATTGGCCCTGACAGATTGAACTGGGACCTTAAGCCATTATCCGATGTTGATGTTCTCACACTTGGGAATGAGAGACCAACTTGGCGCCAGGCAGCCCCAATGACACGGTGTCGCGGTACCATTTTTGGTTGTACACTGCTGAGAATTTAG 1038 0.4721 MSGLIEGLPDAVAIRCLARVPFYLHPKLELVSRSWQAAIRSPELFKARKEVGSSEELLCVCAFDPENLWQMYDPLRDLWITLPVLPSKIRHLSHFGAVSTAGKLFVIGGGSDAVDPRTGDQYGCFATDEVWSYDPVVRQWSLRASMLVPRSMFACCVLNGKIVVAGGFTSCRKSISQAEMYDPEKDVWIPMPDLHRTHNSACSGVMIGGKVHVLHKDMSTVQVLDNAGAGWIVEDCGWFQSPMAVVQDALYVMSHGLIHKQEKDVRKVVGSASEFRRRIGFGMIGLGNELYVIGGFIGPDRLNWDLKPLSDVDVLTLGNERPTWRQAAPMTRCRGTIFGCTLLRI* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1106 345 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP30 2 345 - -
Lja1g1106 345 SUPERFAMILY Kelch motif 61 334 IPR015915 GO:0005515
Lja1g1106 345 Gene3D - 62 344 IPR015915 GO:0005515
Lja1g1106 345 SMART fbox_2 8 48 IPR001810 GO:0005515
Lja1g1106 345 SMART kelc_smart 161 208 IPR006652 GO:0005515
Lja1g1106 345 SMART kelc_smart 103 160 IPR006652 GO:0005515
Lja1g1106 345 SMART kelc_smart 289 344 IPR006652 GO:0005515
Lja1g1106 345 Pfam Kelch motif 277 330 IPR006652 GO:0005515
Lja1g1106 345 Pfam Kelch motif 92 146 IPR006652 GO:0005515
Lja1g1106 345 Pfam Kelch motif 149 194 IPR006652 GO:0005515
Lja1g1106 345 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 2 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1106 Lja-Chr1 11029530 11033339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1106 8 188 Miscellaneous Gene Families AT4G33900 28.272 1.02e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1106 - - gmx:100800954 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1106 1 11029530 11033339 Lja1g1106 1 11029530 11033339 ECH