Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1104 ATGGAAAAGTTAAGTGCATTTCAAATGAGAGTGATACTAATTATACTAGCAGCCCTAATTGTCTCTTCAGTAAAATTGGTCCATGGGCAGATTAGTACACCCTGCACAACCGCTTTGATGAGCACTTTCACTCCATGCGCAAACATTATTACAGGAAGCACTAACAATGGTTTCGCGCCACCATCTACATGTTGTGATTCATTGAGGTCCTTGATGAACACTAACATGGATTGTGCTTGCTTGGTAATCTCTGCCAATGCTCCTCTTTTCCAACTACCCATTAACCAAGTTCTTGCCCTCTCCCTCTCACGAGCTTGCAACATTAATGGAATTGCTCTACAGTGCAAAGCTTCTGGTTCTCCTTTGCCAGCTCCAGGCCCAGCAATTTTTGGATCAAATAACCCAACTCTCCCTTCATCAAGTGCTGCACCTACCTTTAGTCCACAAGGTTCAGAAACCATAGCTGAGGGTAAAGCACACAAATATGAGAATCTGCAAGTGGCACAGACACTGGTGGCACCAGCATCATCACCAGTGGAAGCAGAATCTCCGACCAGAACTCCAGGAATCCGACCAGTTTTGACTACTCCACATCCTTCAGCATCTACCCCATCTTGTGCTTCCTTGTCACCTTTTGCATTCACACTCTTAGCAATCATGGTCTTTGGCATCTAA 675 0.4489 MEKLSAFQMRVILIILAALIVSSVKLVHGQISTPCTTALMSTFTPCANIITGSTNNGFAPPSTCCDSLRSLMNTNMDCACLVISANAPLFQLPINQVLALSLSRACNINGIALQCKASGSPLPAPGPAIFGSNNPTLPSSSAAPTFSPQGSETIAEGKAHKYENLQVAQTLVAPASSPVEAESPTRTPGIRPVLTTPHPSASTPSCASLSPFAFTLLAIMVFGI* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1104 224 CDD AAI_LTSS 43 108 - -
Lja1g1104 224 PANTHER CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKE 12 221 - -
Lja1g1104 224 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 12 221 IPR043325 -
Lja1g1104 224 Gene3D - 32 112 IPR036312 -
Lja1g1104 224 SMART aai_6 35 115 IPR016140 -
Lja1g1104 224 Pfam Probable lipid transfer 20 115 IPR016140 -
Lja1g1104 224 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 39 111 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1104 Lja-Chr1 11010847 11012509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1104 30 130 Lipid Metabolism Gene Families AT2G48140 57.426 5.13e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1104 - - gmx:100786841 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1104 1 11010847 11012509 Lja1g1104 1 11010847 11012509 ECH