Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1103 ATGCTTGCAATACGGAAGGTCAAAACAGGTCCAGATCTTGCTTTTGTTTTACGTTTCATGGTTGCTACTTGCAATTATGGCAATGCCCGAGTTTCAAATAACAGAAGTCTCCAGTCTGTTGTTAAGTCTGTTAGCCCTTCTTTAGCCAACTCGCGTGCACATGCACTTCTACAAGGACTATATTTCTCAAGTATGGCCGAAAGAATCCTGGTCCAGGCTCAAGACCCAGCCAAAGTTAGTTTGGAAATAGAAAATGCTATCGATGAGAATCAATTAGATTATTCATGGAAGTTATTTGAGCAGCATATGCACATGGATGGATTTCCCAGAAAATCTGTCTTCAACAAGCTTGTAACAAGTTATGTCGAAAGCCTTGATACGCAATGGTTGCGAAAAGCTTATGAGTTGGAAGAACGTGCTATTGAGGAAGGTAAACACGACTTGTTAGAGAAGGAGGTGCTTATCTATCTTAGCCTTGGCCTTGCAAAAGCCGGACTACCTGTTCTAGCATCAACTATTTTAAGAAAGATGATTGGTATGGGCCATTTTCCTCGTGTCACTGCTTGGTCTGCAGTTTTGGCGAACATGTCACAAACAGCTGATGGAAGTTACCTTGCTGCTGAGTTGATCCTTGAAATAGGTTATATGTTCCAAAACAACAGAGTTGATCCGCGTAAAAAGAGCAATGCACCTTTGATAGCTATGAAGCCAAACACGGCTGCTTTTAACATTGCGTTGGCAGGTTGTCTCTTATTTGATACATCTAGAAAGGCAGAGCAACTTCTTGATATGATGCCTCGAATCGGCGTCAAAGCGGATTCAAACTTACTAGTAACAATGGCACGCATATATGAGAGAAATGGGCGAAGAGAAGAGCTTAAGAAGCTGCAAAGGCACATAGAGGACGCTCCAAATCTAACTGATATACAGTTCCGACAGTTCTACAATTGTTTGCTCACATGCCATTTGAAATTTGGGGATCTAGATTCTGCATCGAACATGGTTTTAGAAATGCTTGGGAAAGCAAAGCAAGCAAGAAATTCACTTGCCGCTGCCAAATTTATTAATGGTGCAGCAAAACTTGATCATAACTATTTTCCTGGACCAGCTTCTGTGCATAGTTTGAGCAACAGTGAGGTTATGGGTAGTTTAGAAAATAACCAGCCAATAAGATCTGCTTTTTCATCTTATGAGGAGTTCTTGAAAGATCGAAACTTCTTACAGCTTGAAGCAGAGTCAAATGCTGTGCTTGGTTCTTTATTAGCTAAGCTGCAGAAACATGTTGATTTGATTACAACCAAACATGGTATTCTGCAACCCACTGAAACAATATATGTAAAATTAGTTAAAGCTTTTCTAGAGGCCAACAAGACCAAGGATTTGGCAGTGTTTCTTCTCAAGGCAGAGAGAGAAGATTCCCCATTTTCCAATGACAATTCAGCCTTGGTTCATGTTATTAATTCGTGCATCTCACTTGGATGGTTGGATCAAGCACATGATCTCCTTGACGAGATGCGTCTAGCTGGAGTTAGAACTGGCTCATCTGTATATGCTTCTCTCTTGAAAGCATATTGTCAAGCAAACAGGGCTGCGGATGTCGCATCGCTTTTGAGAGACGCTAGGAAGGCCGGTATCCAGCTTGACTCAAGCTCTTATGAGGCAATGATCCAATCCAGGGTGCTCCAGGAAGATACAAAGGGAGCACTCAAACTATTTCAAGAGATGAAAGAGGCAAAGATTCCGAAAGTTAGTCGACAGAACCCTGGCATGCTAACTAAAAGTGGTGCTGAAACAGATGAAGCCACCCTGATGACAAAGCTATTGCATGAAATCAAGGAAGGACAGAGTGTGGATTGTGGGGTTCATGATTGGAATAACGTGATCCACTTTTTTTGTAAGAAGAGACTAATGCAAGATGCAGAAAAGGCTCTGAAGAAGATGAGAAGCTTAGGCCACTCACCCAATGCACAAACTTTCCATTCGATGGTCACTGGGTATGCTGCCATTGGAGGCAAATATCTGGAGGTAACCGAGCTGTGGGGTGAGATGAAATCTCTTGCTTCTTCTTCATCCTCCATGAAGTTTGATCAGGAACTTCTAGATTCTGTGCTGTATACATTTGTGAGGGGTGGATTCTTCACTCGAGCCAATGAAGTCGTGTCCATGATGGAAAAGGGGAAAATGTTCATTGACAAGTACAAGTACAGAATGCTATTCTTGAAATATCATAAAACACTTTACAAAGGCAAGGCTCCCAAATTTCAGACAGAATCTCAGCTAAACAAAAGGGAAGCAGCCATTGCTTTTAAAAGGTGGATAGGCTTGACTTGA 2331 0.4183 MLAIRKVKTGPDLAFVLRFMVATCNYGNARVSNNRSLQSVVKSVSPSLANSRAHALLQGLYFSSMAERILVQAQDPAKVSLEIENAIDENQLDYSWKLFEQHMHMDGFPRKSVFNKLVTSYVESLDTQWLRKAYELEERAIEEGKHDLLEKEVLIYLSLGLAKAGLPVLASTILRKMIGMGHFPRVTAWSAVLANMSQTADGSYLAAELILEIGYMFQNNRVDPRKKSNAPLIAMKPNTAAFNIALAGCLLFDTSRKAEQLLDMMPRIGVKADSNLLVTMARIYERNGRREELKKLQRHIEDAPNLTDIQFRQFYNCLLTCHLKFGDLDSASNMVLEMLGKAKQARNSLAAAKFINGAAKLDHNYFPGPASVHSLSNSEVMGSLENNQPIRSAFSSYEEFLKDRNFLQLEAESNAVLGSLLAKLQKHVDLITTKHGILQPTETIYVKLVKAFLEANKTKDLAVFLLKAEREDSPFSNDNSALVHVINSCISLGWLDQAHDLLDEMRLAGVRTGSSVYASLLKAYCQANRAADVASLLRDARKAGIQLDSSSYEAMIQSRVLQEDTKGALKLFQEMKEAKIPKVSRQNPGMLTKSGAETDEATLMTKLLHEIKEGQSVDCGVHDWNNVIHFFCKKRLMQDAEKALKKMRSLGHSPNAQTFHSMVTGYAAIGGKYLEVTELWGEMKSLASSSSSMKFDQELLDSVLYTFVRGGFFTRANEVVSMMEKGKMFIDKYKYRMLFLKYHKTLYKGKAPKFQTESQLNKREAAIAFKRWIGLT* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1103 776 Pfam Pentatricopeptide repeat domain 535 580 IPR002885 -
Lja1g1103 776 PANTHER BNAC05G43320D PROTEIN 15 775 - -
Lja1g1103 776 Gene3D Tetratricopeptide repeat domain 589 771 IPR011990 GO:0005515
Lja1g1103 776 Gene3D Tetratricopeptide repeat domain 160 365 IPR011990 GO:0005515
Lja1g1103 776 TIGRFAM PPR: pentatricopeptide repeat domain 624 656 IPR002885 -
Lja1g1103 776 TIGRFAM PPR: pentatricopeptide repeat domain 516 548 IPR002885 -
Lja1g1103 776 Pfam PPR repeat 315 340 IPR002885 -
Lja1g1103 776 Pfam PPR repeat 485 510 IPR002885 -
Lja1g1103 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 620 654 IPR002885 -
Lja1g1103 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Lja1g1103 776 Gene3D Tetratricopeptide repeat domain 432 585 IPR011990 GO:0005515
Lja1g1103 776 PANTHER OS10G0422566 PROTEIN 15 775 - -
Lja1g1103 776 Pfam PPR repeat family 622 667 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1103 Lja-Chr1 11006462 11010085 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1103 516 738 Miscellaneous Gene Families AT4G11690 23.246 8.72e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1103 - - gmx:102661989 1277.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1103 1 11006462 11010085 Lja1g1103 1 11006462 11010085 ECH