Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1090 ATGGATTGGTTTTCTAAGATTTGCACTCTTGTAATCTTCTTCCTTGGTACCCTTATCTATAATGTGTTCTCTCTCTCAATCAGTTTAAACGATGTCGAATGCGTGTCGGAGCACGCTCAATCCGGGGACTCTGTGACTGGGAACTTCGTTGTCATGGACCATGACATTTTTTGGAGCTCAGACCATCCTGGAATTGATTTCACCGTGACAAACCCAGGAGGGAATGCGGTACACTCATTGAAGGGAACTTCAGGGGACAAGTTTGAGTTCAAAGCGCCACAAAATGGAATTTACAAGTTCTGCTTTCACAATCCTATGTCTACCCCGGAGACTGTCTCTTTCTACATTCATGTTGGTCACATCCCAAGCGAGCATGACTTAGCTAAAGATGAGCATTTGGACCCAATAAACGTGAAGATTGCGGAGTTGAGAGAAGCATTGGAGTCTATCATAACAGAGCAAAAGTACTTGAAAGCACGTGATAATAGACATCGATATACAAATGAGAGCACAAAAACACGTGTTATCTTCTACACAGTGTTGGAGTATATTTTATTAGCTGTTACAAGCATATTACAAGTAGTATACATTCGTCGCCTCTTCAGCAAATCGTTTGCCTACAACCGAGTGTAG 633 0.4218 MDWFSKICTLVIFFLGTLIYNVFSLSISLNDVECVSEHAQSGDSVTGNFVVMDHDIFWSSDHPGIDFTVTNPGGNAVHSLKGTSGDKFEFKAPQNGIYKFCFHNPMSTPETVSFYIHVGHIPSEHDLAKDEHLDPINVKIAELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYILLAVTSILQVVYIRRLFSKSFAYNRV* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1090 210 Pfam emp24/gp25L/p24 family/GOLD 27 201 IPR009038 -
Lja1g1090 210 PANTHER EMP24/GP25L/P24 FAMILY/GOLD PROTEIN 4 206 - -
Lja1g1090 210 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 4 206 IPR015720 -
Lja1g1090 210 ProSiteProfiles GOLD domain profile. 32 118 IPR009038 -
Lja1g1090 210 SMART EMP24_GP25L_2 24 202 IPR009038 -
Lja1g1090 210 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 33 125 IPR036598 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1090 Lja-Chr1 10881973 10883588 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1090 K20347 - gmx:100789501 344.354