Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1086 ATGGCAGTGGCACTTACAGAAAATCAGATTGCTGAATTCCAAGAAGCCTTTTGCCTCATTGACAAGGACTCAGATGGATTCATTACAGTGGAGGAAATAGCAACCATTATCAGATCATTAGAGGGGATTCCAACAAAAGAAGAAATCCAAGATATGATTAGCGAAGTGGATATTGATGGGAATGGGAGTATAGATTTTGAAGGGTTCTTGAATATTATGGCTAGAAAAATGAAGGAAAATATGGTTGATGAGCTAAAGGAAGCATTCAAAGTTTTTGATAGAGATCAAGATGGATACATATCAGCCACAGAGCTGAGAAACGTGATGATGAATTTGGGAGAGAGGCTTTCAGATGAAGAGGCAGAACAAATGATTAGAGAAGCAGATTTGGATGGGGATGGTCAAGTTAGCTATGAAGAATTTGCTAGGATGATGACACTGAATTGA 447 0.3848 MAVALTENQIAEFQEAFCLIDKDSDGFITVEEIATIIRSLEGIPTKEEIQDMISEVDIDGNGSIDFEGFLNIMARKMKENMVDELKEAFKVFDRDQDGYISATELRNVMMNLGERLSDEEAEQMIREADLDGDGQVSYEEFARMMTLN* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1086 148 Gene3D - 1 77 - -
Lja1g1086 148 Coils Coil 102 122 - -
Lja1g1086 148 CDD EFh 84 146 IPR002048 GO:0005509
Lja1g1086 148 SUPERFAMILY EF-hand 3 146 IPR011992 -
Lja1g1086 148 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Lja1g1086 148 PANTHER CALMODULIN-LIKE PROTEIN 9 1 146 - -
Lja1g1086 148 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Lja1g1086 148 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Lja1g1086 148 Pfam EF-hand domain pair 12 73 IPR002048 GO:0005509
Lja1g1086 148 Pfam EF-hand domain pair 84 145 IPR002048 GO:0005509
Lja1g1086 148 ProSitePatterns EF-hand calcium-binding domain. 129 141 IPR018247 -
Lja1g1086 148 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Lja1g1086 148 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Lja1g1086 148 PANTHER CALCIUM BINDING PROTEIN 1 146 - -
Lja1g1086 148 ProSiteProfiles EF-hand calcium-binding domain profile. 116 148 IPR002048 GO:0005509
Lja1g1086 148 Gene3D - 78 148 - -
Lja1g1086 148 SMART efh_1 48 76 IPR002048 GO:0005509
Lja1g1086 148 SMART efh_1 84 112 IPR002048 GO:0005509
Lja1g1086 148 SMART efh_1 120 148 IPR002048 GO:0005509
Lja1g1086 148 SMART efh_1 12 40 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1086 Lja-Chr1 10817122 10818208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1086 12 76 EF-hand Containing Proteins AT3G56800 41.538 1.56e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1086 K02183 K13448 gmx:100527005 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1086 1 10817122 10818208 Lja1g1086 1 10817122 10818208 ECH