Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1082 ATGGCGGGAAAAGGAGGAAAGGGGCTTCTGGCTGCCAAAACCACCAAGGACAAAGCCAAGGAAAGCGATAAGAAGAGGCCTGTTTCTCGCTCATCCCGTGCTGGGATTCAGTTTCCAGTGGGTAGAATCCACAGGCAACTGAAGCAAAGGGCACATGCACATGGCCGTGTTGGGGGTACTGCTGCTGTTTACTTGGCCTCCATTCTGGAATATCTGACTGCTGAGGTGCTGGAGCTGGCTGGGAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCGCGTCACTTGCAGCTCGCTATCAGGGGAGATGAAGAGCTTGACACCCTCATCAAAGGAACCATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCTTGATCAACAAAACCTCCAAAGAGTGA 408 0.5221 MAGKGGKGLLAAKTTKDKAKESDKKRPVSRSSRAGIQFPVGRIHRQLKQRAHAHGRVGGTAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1082 135 MobiDBLite consensus disorder prediction 1 35 - -
Lja1g1082 135 Pfam C-terminus of histone H2A 105 134 IPR032454 -
Lja1g1082 135 Pfam Core histone H2A/H2B/H3/H4 15 103 IPR007125 GO:0003677
Lja1g1082 135 MobiDBLite consensus disorder prediction 11 30 - -
Lja1g1082 135 PRINTS Histone H2A signature 26 48 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lja1g1082 135 PRINTS Histone H2A signature 56 71 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lja1g1082 135 PRINTS Histone H2A signature 71 84 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lja1g1082 135 PRINTS Histone H2A signature 85 99 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lja1g1082 135 PRINTS Histone H2A signature 112 130 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lja1g1082 135 SUPERFAMILY Histone-fold 14 112 IPR009072 GO:0046982
Lja1g1082 135 Gene3D Histone, subunit A 14 135 IPR009072 GO:0046982
Lja1g1082 135 CDD H2A 18 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lja1g1082 135 PANTHER HISTONE H2A 2 133 - -
Lja1g1082 135 SMART h2a4 15 135 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lja1g1082 135 PANTHER HISTONE H2A 2 133 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1082 Lja-Chr1 10782181 10784049 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1082 K11251 - fve:101311431 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1082 1 10782181 10784049 Lja5g1924 5 23760315 23761556 PCT