Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1050 ATGTCGTCGAACCCTCAAAATCAAAAGCCATGGAAAGCAGAGTACGCCAAGTCAGGCCGATCGTCATGCCGGACCTGCAAGTCCCCCATTGACAAGGAGGTCTTCCGTCTCGGCAAGATGGTTCAATCCACCCAATTCGATGGCCTCATGCCTATGTGGCATCATGCTGATTGCATATTGAAGAAATCCAACCAGATAAAATTAGTTGATGATGTTGAAAACTTAGAGTCGCTTCGTTGGGAAGACCAGCAAAAGATCAGAAAGTACATCGAGAGTGGCGGTGGCGGTAGTGGTGGCACGCCAACGCCAAAAAAGGCTAACAAAAATACTGAGTGTGGTATTGAAGTTTCACAAACTTCTCGTGCTACTTGCAAGGATTGTGGTCAAAAAATCATCAAGGGAGAGGTTCGAATATCCACTAAGCCTGAAGGTCAAGGTGCTAGGGGTTTGGCTTGGCACCATGCCAAGTGTCTCATGGAATTATCACCATCGATTCAAGTGGATAAGTTGTCTGGATGGAATAGTCTCTCATCTTCTGATCAATCAGCCGTCAGTGACTTGGCTAAGGGTCATCCTATGAATAAGGGAGATGGTAGTGATACAAAGATCGAGGCTGAAGAGTTTAATGAATCCGCACACCAATCCACTTCCAAAGGTGGCACCAAACGGGGGAAGAATGCCGATAGTGAGCGGAAGTCAAAAGTTACTAAGGCCAAAGAGGATGTGTCTGCAGGCAGGGCAGCATCAATGAAAAATGCTGATGGCTTAGGGGAAGCATGTGATCTGGAGACTAAACTGGAGGCCCAGAGCAAAGAACTCTGGGCTCTGAAGGATGATCTTAAGAAGAATGTGACAACAGCAGAGTTGCGTGAAATACTGGAAGTCAATGGTCAAGATTCAACAGGATCAGAACTTGATTTGCGTGATCGCTGTGCTGATGGAATGATGTTTGGAGCACTTGGTCATTGCCCAATATGTTCTGGTTATCTGCGTTATTCTGGAGGAATGTTCCGGTGCAATGGATACATTTCTGAGTGGAGTAAATGTTCCTACTCTACCAGCGAACCAAAACGTACTGAAGGGAAGTGGAAAATCCCGGAGGAAACAAATAATCAATACCTAAAAAAGTGGTTCAAATCTCAAAAGGGGAAGAAACCAGTTAGGATATTGCCTCTGCCATCATCAATGAACTCTGTTGAAAGTCAAATTACTAATTCCCAGCAGCATCAATCATCAAGCAGTGAGAGTTTGATGGATTTGAAAGTTTCTATTGCTGGATTACCTAAAGAATCTATTGAGGATTGGAAACGCAAAATTGATGGCGTTGGTGGGGTTTTTCATGCAAAAGTGAAGAAAGATACTAGCTGCTTGGTGGTCAGTGGAGCACTTAATGATGAAGCTGAGATGCGGAAGGCAAGGAGGATGAAAATACCAATAGTAAGAGAGGACTATTTGGTTGACTGTATGGAAAGAAATAAGAAGCTTCCATTTGATATGTACAAAGTTGAAAAGATTGGTGAGGCTTCTAGCATGGTCACTGTCAAAGTGAAGGGGCAGAGTGCTGTTCACGAAGCTTCTGGCCTACAGGATTCCGGCCACATACTCGAGGAAGGGAAAAGCATATATAATACAACTTTGAACATGTCTGATTTGTCTACTGGTGTTAACAGCTACTACATTCTCCAAATAATCCAAGAAGATAAGGGGTCAGGTTGCTATGTGTTTCGTAAATGGGGTCGTGTGGGAAATGACAAGATTGGAGGAAAGAAACTGGACGAAATGCCAAAAGGTGATGCAATCCGTGAATTCAGACGATTATTCTTTGAGAAAACTGGAAATCCTTGGGACGCTTGGGAACAAAAGACTATTCAGAAGCAACCTGGAAGATTTTTCCCATTGGATATTGATTATGGAGTTAGCAAGCAGGTGTCCAAAAAAATTAAAAATGAAGATAGTAAACTACCCTATCCATTAATAGAATTGATGAAGATGCTCTTCAATGTGGAAACATACAGAGCTGCCATGATGGAATTTGAGATTAATATGTCCGAAATGCCACTTGGGAAACTGAGCAAAAGTAATATCCAAAAGGGGTTTGAAGCATTAACGGATATACAAAATTTGTTACAAACTAGCAATCCTGATCCATCAGTCAGGGAAAGCTTGCTTATTGATGCCAGCAATCGGTTCTTCACTATGATCCCTTCTATTCATCCACATATAATTAGGGATGATGATGATTTTAAGTCAAAGGTGAAAATGTTAGAAGCCCTTCAAGACATTGAAATAGCCTCAAGATTAGTTGGATTTGATGCCAACAGTGATGACTCCATTGATGATAATTACAAGAAGCTCCACTGTGATATGTCTCCACTTCCTCATGACAGCGAAGATTTCCGTTTAGTTGAGAAGTTTCTCCATAACACCCATGCCCCCACTCATACGGATTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGAGAGTTTGATAAGTTTGCTCCTTACAGGGACAAACTTGGTAACAGAATGCTCCTATGGCATGGTTCTAGGTTGACAAACTTTGTTGGAATTCTGAGCCAAGGACTGAGAATTGCCCCTCCTGAAGCCCCTGCGACTGGATATATGTTTGGCAAAGGGGTTTACTTTGCTGACCTGGTCAGCAAGAGTGCTCAGTATTGCTTCACGGATAAGAAAAACCCTGTTGGTCTAATGCTTCTGAGTGAAGTTGCCCTTGGAGATGTCTATGAACTCAAAAAAGCTAAGTATATGGACAAACCTCCAGTAGGAAAGCACTCTACTAAAGGACTGGGCAAGAAAATGCCTCAGGAATCAGAATATGTAAAGTGGAGGGATGATGTCGTCGTTCCTTGTGGCAAACCAGTGTCATCAAATGTCAAGGCATCTGAACTCATGTACAATGAGTATATTGTTTATAATACTGCTCAAGTCAAGATGCAATTCTTATTGAAGGTGAGGTTCCATCACAAAAGGTGA 3006 0.4245 MSSNPQNQKPWKAEYAKSGRSSCRTCKSPIDKEVFRLGKMVQSTQFDGLMPMWHHADCILKKSNQIKLVDDVENLESLRWEDQQKIRKYIESGGGGSGGTPTPKKANKNTECGIEVSQTSRATCKDCGQKIIKGEVRISTKPEGQGARGLAWHHAKCLMELSPSIQVDKLSGWNSLSSSDQSAVSDLAKGHPMNKGDGSDTKIEAEEFNESAHQSTSKGGTKRGKNADSERKSKVTKAKEDVSAGRAASMKNADGLGEACDLETKLEAQSKELWALKDDLKKNVTTAELREILEVNGQDSTGSELDLRDRCADGMMFGALGHCPICSGYLRYSGGMFRCNGYISEWSKCSYSTSEPKRTEGKWKIPEETNNQYLKKWFKSQKGKKPVRILPLPSSMNSVESQITNSQQHQSSSSESLMDLKVSIAGLPKESIEDWKRKIDGVGGVFHAKVKKDTSCLVVSGALNDEAEMRKARRMKIPIVREDYLVDCMERNKKLPFDMYKVEKIGEASSMVTVKVKGQSAVHEASGLQDSGHILEEGKSIYNTTLNMSDLSTGVNSYYILQIIQEDKGSGCYVFRKWGRVGNDKIGGKKLDEMPKGDAIREFRRLFFEKTGNPWDAWEQKTIQKQPGRFFPLDIDYGVSKQVSKKIKNEDSKLPYPLIELMKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTDIQNLLQTSNPDPSVRESLLIDASNRFFTMIPSIHPHIIRDDDDFKSKVKMLEALQDIEIASRLVGFDANSDDSIDDNYKKLHCDMSPLPHDSEDFRLVEKFLHNTHAPTHTDWSLELEEVFSLEREGEFDKFAPYRDKLGNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCFTDKKNPVGLMLLSEVALGDVYELKKAKYMDKPPVGKHSTKGLGKKMPQESEYVKWRDDVVVPCGKPVSSNVKASELMYNEYIVYNTAQVKMQFLLKVRFHHKR* 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1050 1001 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 14 90 IPR001510 GO:0003677|GO:0008270
Lja1g1050 1001 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 115 186 IPR001510 GO:0003677|GO:0008270
Lja1g1050 1001 PANTHER DNA LIGASE 51 995 - -
Lja1g1050 1001 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 111 196 - -
Lja1g1050 1001 SMART zf_PARP_3 14 91 IPR001510 GO:0003677|GO:0008270
Lja1g1050 1001 SMART zf_PARP_3 115 189 IPR001510 GO:0003677|GO:0008270
Lja1g1050 1001 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 112 186 IPR001510 GO:0003677|GO:0008270
Lja1g1050 1001 SUPERFAMILY WGR domain-like 510 635 IPR036930 -
Lja1g1050 1001 SUPERFAMILY BRCT domain 413 502 IPR036420 -
Lja1g1050 1001 PANTHER POLY [ADP-RIBOSE] POLYMERASE 1 51 995 - -
Lja1g1050 1001 Gene3D - 319 379 IPR038650 -
Lja1g1050 1001 ProSiteProfiles WGR domain profile. 531 630 IPR008893 -
Lja1g1050 1001 CDD parp_like 652 996 - -
Lja1g1050 1001 PIRSF NAD_ADPRT 4 1001 IPR008288 GO:0003677|GO:0003950|GO:0005634|GO:0008270|GO:0051287
Lja1g1050 1001 Gene3D - 2 105 IPR036957 GO:0003677|GO:0008270
Lja1g1050 1001 SUPERFAMILY ADP-ribosylation 785 1000 - -
Lja1g1050 1001 SMART BRCT_7 415 492 IPR001357 -
Lja1g1050 1001 MobiDBLite consensus disorder prediction 193 211 - -
Lja1g1050 1001 Gene3D - 106 197 IPR036957 GO:0003677|GO:0008270
Lja1g1050 1001 Gene3D - 786 1001 - -
Lja1g1050 1001 Gene3D - 246 318 - -
Lja1g1050 1001 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 11 94 IPR001510 GO:0003677|GO:0008270
Lja1g1050 1001 Pfam BRCA1 C Terminus (BRCT) domain 419 489 IPR001357 -
Lja1g1050 1001 Pfam Poly(ADP-ribose) polymerase, regulatory domain 652 782 IPR004102 GO:0003950
Lja1g1050 1001 Pfam PADR1 (NUC008) domain 309 359 IPR012982 -
Lja1g1050 1001 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 8 107 - -
Lja1g1050 1001 SMART PADR1_2 307 360 IPR012982 -
Lja1g1050 1001 CDD WGR_PARP1_like 532 637 - -
Lja1g1050 1001 ProSiteProfiles PARP catalytic domain profile. 776 1001 IPR012317 GO:0003950
Lja1g1050 1001 MobiDBLite consensus disorder prediction 90 111 - -
Lja1g1050 1001 MobiDBLite consensus disorder prediction 175 246 - -
Lja1g1050 1001 ProSitePatterns Poly(ADP-ribose) polymerase zinc finger domain signature. 23 58 IPR001510 GO:0003677|GO:0008270
Lja1g1050 1001 Gene3D - 642 785 IPR036616 GO:0003950
Lja1g1050 1001 MobiDBLite consensus disorder prediction 223 241 - -
Lja1g1050 1001 Pfam Poly(ADP-ribose) polymerase catalytic domain 796 997 IPR012317 GO:0003950
Lja1g1050 1001 Pfam WGR domain 542 620 IPR008893 -
Lja1g1050 1001 ProSiteProfiles PARP alpha-helical domain profile. 651 769 IPR004102 GO:0003950
Lja1g1050 1001 ProSiteProfiles BRCT domain profile. 412 502 IPR001357 -
Lja1g1050 1001 Gene3D BRCT domain 408 512 IPR036420 -
Lja1g1050 1001 SMART WGR_cls 542 625 IPR008893 -
Lja1g1050 1001 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 652 786 IPR036616 GO:0003950
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1050 Lja-Chr1 10480419 10490027 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1050 K24070 - gmx:100815900 1702.57