Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1028 ATGGACAAGCTGAACCTAGCTCAACTCGGCGAGAGGTTGAAGACGGGTGGGGCCCAGATGGGTCGGATCGTGTCCGGCAAGGTGAAGGATCTCCTCGCCGCGCCGACGCCGGAATCCAAGATGGTCGACGAAGCCACGCTGGAGACGCTGGAGGAGCCGAATTGGGGCATGAATCTGAGGATATGCGGGATGATCAACAGCGACGAGTTCAACGGTTCGGAGGTGGTGAAGGCAATCAAGAGGAAGATCAATCACAAGAGCCCTGTTGTTCAGAGACTCAGTCTTGATTTGCTGGAAACGTGTGCTATGAACTGTGAGAAGGTGTTCTCTGAAGTGGCTTCTGAGAAGCTTCTTGAGGACATGGTTCGGTTGATTGATAACGTGGAAGCGTATCATGAGAATCGGAGAAGGGCTTTTCAGTTGGTTAAGGCTTGGGGTGAGTCTGAGGATCTTGCTTATCTTCCTGTGTTTCGTCAAACTTATATGAGTTTGAACGGAAGAGGTGAACCACTTGACATGGGAGGAGGAAATTCAGCAGCTGTTCCGTATTCCTTGGAGTCATATACACATCAAGACCCTTTAGATCCCCCTGAAAGATACCCGATTCCTGAAGCAGGACTGCATGCTCTGGATGGCTCTGCAGCATTCTCTTCTAACCACCTACCCGTATCAGTTGAAGAGAAGAAAGAGCATCTCGTGGTTGCTCGAAACAGTCTTGAGTTGCTCTCTAGCATATTAAATTCTGAGGCAGAGCCAAAACCTTTGAAGGAAGATTTAGCTTTGAGCTTGTTGGATAAGTGCAAGCAATCACTCTCTGTCATCAAGGAGATTGTGGAAAGCACTACAAATGATGAAGTGACACTTTTTGAGGCTTTGTATCTTAATGATGAACTGCAACAGGTAGTTTCCAATTATGAGGAGTTGGAAGCTGCTCAAGGATCTGGGGCACAACAACCTCCAAATGCTGACCCTGCCAAGCATGATGCGGAAGCTGTTCAAAACCCTAATGAGAGACCTGAAAGATTTGAAGGTGGTGAATCTGAAGCTCAGAATCCAAAGCTGCCACTGAAGTCTGACACTCCTGAAGTCAATGCAACCGATGGGGATGGTCATGATGAAGCCAAAATAGTGGATAGCACAAAAGAGAAGAATGAAGAATCTAGCCTAAAGAGAAATACCGAATAA 1185 0.4734 MDKLNLAQLGERLKTGGAQMGRIVSGKVKDLLAAPTPESKMVDEATLETLEEPNWGMNLRICGMINSDEFNGSEVVKAIKRKINHKSPVVQRLSLDLLETCAMNCEKVFSEVASEKLLEDMVRLIDNVEAYHENRRRAFQLVKAWGESEDLAYLPVFRQTYMSLNGRGEPLDMGGGNSAAVPYSLESYTHQDPLDPPERYPIPEAGLHALDGSAAFSSNHLPVSVEEKKEHLVVARNSLELLSSILNSEAEPKPLKEDLALSLLDKCKQSLSVIKEIVESTTNDEVTLFEALYLNDELQQVVSNYEELEAAQGSGAQQPPNADPAKHDAEAVQNPNERPERFEGGESEAQNPKLPLKSDTPEVNATDGDGHDEAKIVDSTKEKNEESSLKRNTE* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1028 394 ProSiteProfiles VHS domain profile. 45 172 IPR002014 GO:0035091|GO:0043130
Lja1g1028 394 Pfam VHS domain 39 146 IPR002014 GO:0035091|GO:0043130
Lja1g1028 394 CDD VHS 39 164 - -
Lja1g1028 394 Gene3D - 32 173 IPR008942 -
Lja1g1028 394 Gene3D - 222 317 IPR038425 -
Lja1g1028 394 MobiDBLite consensus disorder prediction 309 394 - -
Lja1g1028 394 ProSiteProfiles GAT domain profile. 223 310 IPR004152 GO:0035091|GO:0043130
Lja1g1028 394 PANTHER TOM1-LIKE PROTEIN 2 1 386 - -
Lja1g1028 394 MobiDBLite consensus disorder prediction 364 394 - -
Lja1g1028 394 PANTHER TOM1-LIKE PROTEIN 1 1 386 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lja1g1028 394 SUPERFAMILY GAT-like domain 193 309 - -
Lja1g1028 394 Pfam GAT domain 236 309 IPR004152 GO:0035091|GO:0043130
Lja1g1028 394 SMART VHS_2 38 168 IPR002014 GO:0035091|GO:0043130
Lja1g1028 394 MobiDBLite consensus disorder prediction 330 347 - -
Lja1g1028 394 SUPERFAMILY ENTH/VHS domain 35 168 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1028 Lja-Chr1 10259306 10262599 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1028 - - gmx:100803803 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1028 1 10259306 10262599 Lja1g1028 1 10259306 10262599 ECH