Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1024 ATGTTCCTTAATTCCTTTCTTCTCTCTTTCTCTGATCTCACAAATCTTCATTATTCTTCTTCTTCTTCTTCAAAAATGGGTTCTCTACCTGCATTTCCAATCGACGATTCTCCCAAACAAGCCCTTACATTCAACATTGACGAAACCACCCTCTCAGATCTCTTCAAATCCCAACAAAACCACCTCAACTACTTCTTCACCCACATCGACCACTCCCAAACCCTCTCCTTCACCCGCGCCCTCCTCGACTCTCCGGGCACCGTCTTCTTCACCGGCGTCGGCAAGTCCGGCTTCGTCGCCCACAAAATCTCCCAAACCCTCATCTCCCTCGGCGTCCGCTCCTCCTTCCTCAACCCCCTTGACGCCCTCCACGGCGACATCGGAATCCTCACCCACCGCGACGTCCTCGTCCTCCTCAGCAAGTCCGGCGCCACCGACGAGCTTCTCCGCCTTGTCCCGTGCGCTAGAGCTAAAGGCGCTCGCCTCATCGCCCTCACCTCCGTCGTCGCCTCCCCCCTCTCCTCCCTCTGCGATATGCATGTCCACCTCCCTCTCGAGCGCGAGCTCTGTCCGTTCAACCTCGCACCGGTTACCTCCACGGCGATTCAGATGGTGTTTGGCGATACCGTTGCCATCGCGCTCATGGCCGCACGGAATCTCACCAAGGATGAGTACGCCGCCAACCACCCCGCCGGGAAGATCGGCAAGAGCCTCATCTTCAAGGTGAGAGATGTGATGAAGAAGGAGGATGAGCTTCCGATTTGCAGGGAAAATGATTTGATCATGGATCAGCTTGTGGAGCTCACCAGCAAAGGATGTGGGTGCTTGCTTGTTGTCGACGGCGATCACCGTCTGATTGGGACTTTCACCGACGGTGATCTCCGGCGTACCCTCAGAGCTAGTGGAGAGGCAATTTTCAAGCTCACAGTGGGGCAAATGTGTAACAGGAATCCAAGAATTATTGGTCCTGATGCAATGGCAGTGGAGGCCATGAAGAAGATGGAAGCACCTCCATCACCTGTCCAGTTTTTGCCTGTGATCAATGATGACATTGTTGTGATTGGGATTGTCACATTGCATGGTTTGGTTTCAGCTGGGTTGTGA 1104 0.5408 MFLNSFLLSFSDLTNLHYSSSSSSKMGSLPAFPIDDSPKQALTFNIDETTLSDLFKSQQNHLNYFFTHIDHSQTLSFTRALLDSPGTVFFTGVGKSGFVAHKISQTLISLGVRSSFLNPLDALHGDIGILTHRDVLVLLSKSGATDELLRLVPCARAKGARLIALTSVVASPLSSLCDMHVHLPLERELCPFNLAPVTSTAIQMVFGDTVAIALMAARNLTKDEYAANHPAGKIGKSLIFKVRDVMKKEDELPICRENDLIMDQLVELTSKGCGCLLVVDGDHRLIGTFTDGDLRRTLRASGEAIFKLTVGQMCNRNPRIIGPDAMAVEAMKKMEAPPSPVQFLPVINDDIVVIGIVTLHGLVSAGL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1024 367 PIRSF KdsD_KpsF 36 367 IPR004800 GO:0005975|GO:0016853
Lja1g1024 367 ProSiteProfiles SIS domain profile. 78 220 IPR001347 GO:0097367|GO:1901135
Lja1g1024 367 CDD CBS_pair_SIS_assoc 238 363 - -
Lja1g1024 367 SUPERFAMILY SIS domain 54 366 IPR046348 GO:0097367|GO:1901135
Lja1g1024 367 Pfam CBS domain 242 298 IPR000644 -
Lja1g1024 367 Pfam CBS domain 310 365 IPR000644 -
Lja1g1024 367 PANTHER BNAC04G26110D PROTEIN 26 367 - -
Lja1g1024 367 PANTHER - 26 367 - -
Lja1g1024 367 CDD SIS_Kpsf 86 213 IPR035474 -
Lja1g1024 367 Gene3D - 237 365 IPR046342 -
Lja1g1024 367 ProSiteProfiles CBS domain profile. 246 305 IPR000644 -
Lja1g1024 367 Gene3D - 47 236 - -
Lja1g1024 367 Pfam SIS domain 85 212 IPR001347 GO:0097367|GO:1901135
Lja1g1024 367 ProSiteProfiles CBS domain profile. 314 367 IPR000644 -
Lja1g1024 367 TIGRFAM kpsF: sugar isomerase, KpsF/GutQ family 86 357 IPR004800 GO:0005975|GO:0016853
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1024 Lja-Chr1 10173109 10175023 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1024 K06041 - gmx:100805755 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1024 1 10173109 10175023 Lja1g1024 1 10173109 10175023 ECH