Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1020 ATGGGCTTGATAGAAAATGCTATAAAATCAATCGCACGAAAGCTTAGGGTTCCAATATTCCAACACTCTCGCTCACTCAATTGCCTACGTCGCCACCGCCGTGATAAGCTATCAGCAACCATGTATCTTCAGTTTTATATAAATGACAATGGTGACAAAGTTTACACCACTAAGAAAGAGTCACCAGTTGGGTTGGCTACACAATCTGCTCATCCAGCTCGGTTTTCACCTGATGACAAATTCTCAAGGCAGAGAGTTCTTTTGAAGAAGCGATTTGGATTGTTACCAACCCAGCAGCCACCTCCTAAGTACTAG 315 0.4317 MGLIENAIKSIARKLRVPIFQHSRSLNCLRRHRRDKLSATMYLQFYINDNGDKVYTTKKESPVGLATQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQQPPPKY* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1020 104 SUPERFAMILY Nop10-like SnoRNP 43 98 IPR036756 GO:0001522|GO:0030515|GO:0042254
Lja1g1020 104 Pfam Nucleolar RNA-binding protein, Nop10p family 43 92 IPR007264 GO:0001522|GO:0030515|GO:0042254
Lja1g1020 104 PANTHER NUCLEOLAR RNA-BINDING NOP10P-LIKE PROTEIN 41 104 - -
Lja1g1020 104 PANTHER RIBOSOME BIOGENESIS PROTEIN NOP10 41 104 IPR007264 GO:0001522|GO:0030515|GO:0042254
Lja1g1020 104 Gene3D H/ACA ribonucleoprotein complex, subunit Nop10 50 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1020 Lja-Chr1 10117583 10120765 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1020 K11130 - gmx:100306376 132.88