Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0983 ATGGCGTCTTCGTTTACGGGTTCTGTTAGTGCTGCCCAGGTGGGTTCCTACTTTGTGGGACAGTACTATCAAGTTCTTCGCCAGCAACCAAGTCTGGTTCATCAGTTTTACTCTGATTCCAGCAGCATGATTCGTGTGGATGGAGATATCACAGAGACTGCACCTGATGTGCTGCAAATTCATTCGATTGTCACTTCGCTGAATTTTTCGACTATTGAGATCAAGACAATCAATTCCCTTGATTCCTGGAATGGGGGTGTGCTTGTGGTGGTCTCGGGCTTTGTTAAGATTAAGGATGTCCACAGGAAGCGGAAGTTTGTTCAGACCTTCCTTCTCGCCCCTCAGGAGAAAGGTTACTTTGTGCTGAATGATATATTTCATTTTGCCGATGATGGAGTAACGCACCCTAATACCGTGCCGGTGGAATCAGAACAATATGACACAGAACCACATTATGTACCTGCTTCTCTTGCCGAGCCACCTGCTGCACACTATGATTTAGAGGAAGAAGCTAGGGAGTATGTCGACTCAGTCCATATAGATGATGATCTTGTGGACAAGTATAGTCTTCCTGAGGAGCAGCAGCAGCTACAAGAAGATTATGAAACTGAATATGTGGTGGAGGAAACTCCTGCACAAGAGGCACCTCCACCAATTCACAGCGTTGCACAGACCACCCATGAAACACCTGTTGCTTTTGTGGAAGAGTCTTTTGAGGAGCCTGCTAAGAAAACTTATGCATCTATTTTACGAGTTTCCAAAGGGCAATCAGTGTTGTCAGCTGCTCCACAACAAGCCCCCCAATATACTTTCAAAAGTGCTCCTCCTCCTCCAGAGGTAAATCACGTAGCACAGCCTGCTGTTCAACAGTCAAGTTCTGCTTCTGCGTATATTCCTGAATCTGGGGCTGAGGCAGCTGAGGAAGGCTATGGAGGCTATGGACTACAAGAAGAAGGTGAAGTAACTTCTGTCTATGTGAGGAACTTGCCTGGTGATGTTACTGAAAGTGAAATTGAGCAGGAATTTAAGAATTTTGGCAGAATTAAGCCAGATGGAATATTCATTAGGGTTCGACAGGAAATTGGAGTTTGCTATGCATTTGTTGAATTTGAAGACATCATTGGTGTTCAAAATGCACTTCAGGCTTCACCCTTACAATTGGCTGGAAGGCAAGTATACATAGAGGAGCGAAGGCCTAACAGTGGCAGTGCAGCTCGCGGAGGAAGAGGAAGGGGAAGAGGCAGAGGCGGTTATCCAACAGATGCTCCAAGAGGACGTTTCGGCGGAAGGAGCTTGGGGAGGGGTAGTTATCAGGATAGAGGTGATGGTTATCAACAGCGTGATAGTTATCAGCAGCGTGATGGTTATCAGCAGCGTGGTTCACGATAG 1389 0.4636 MASSFTGSVSAAQVGSYFVGQYYQVLRQQPSLVHQFYSDSSSMIRVDGDITETAPDVLQIHSIVTSLNFSTIEIKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLAPQEKGYFVLNDIFHFADDGVTHPNTVPVESEQYDTEPHYVPASLAEPPAAHYDLEEEAREYVDSVHIDDDLVDKYSLPEEQQQLQEDYETEYVVEETPAQEAPPPIHSVAQTTHETPVAFVEESFEEPAKKTYASILRVSKGQSVLSAAPQQAPQYTFKSAPPPPEVNHVAQPAVQQSSSASAYIPESGAEAAEEGYGGYGLQEEGEVTSVYVRNLPGDVTESEIEQEFKNFGRIKPDGIFIRVRQEIGVCYAFVEFEDIIGVQNALQASPLQLAGRQVYIEERRPNSGSAARGGRGRGRGRGGYPTDAPRGRFGGRSLGRGSYQDRGDGYQQRDSYQQRDGYQQRGSR* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0983 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 399 IPR000504 GO:0003723
Lja1g0983 462 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Lja1g0983 462 PANTHER GB|AAD20086.1 9 443 - -
Lja1g0983 462 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 443 IPR039539 -
Lja1g0983 462 SUPERFAMILY RNA-binding domain, RBD 320 429 IPR035979 GO:0003676
Lja1g0983 462 CDD RRM_SF 324 395 - -
Lja1g0983 462 MobiDBLite consensus disorder prediction 398 462 - -
Lja1g0983 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 382 IPR000504 GO:0003723
Lja1g0983 462 Gene3D - 316 455 IPR012677 -
Lja1g0983 462 SUPERFAMILY NTF2-like 10 128 IPR032710 -
Lja1g0983 462 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Lja1g0983 462 Gene3D - 5 132 - -
Lja1g0983 462 MobiDBLite consensus disorder prediction 442 462 - -
Lja1g0983 462 CDD NTF2 10 130 IPR018222 -
Lja1g0983 462 SMART rrm1_1 323 395 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0983 Lja-Chr1 9753776 9759411 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0983 - - gmx:100787900 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0983 1 9753776 9759411 Lja1g0983 1 9753776 9759411 ECH