Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0974 ATGGAGGAAGACGGCGAGATTTACGACGGTGCTAGGGCTCAATTCCCTCTGAGCTTCGGCAAGCAATCCAAGTCTCAAACCCCTCTCGAAGCAATCCACAACGCCACTCGTCGTTCCAATTCCAAAACCACCACCGATTTCCCTCCCGTTTCCTCTTCTTCCAAGGAATGGCTCAGCTCCCTCCGCCCCTCCAAAAACCCCACCGCACCTCCTCCGCCCGAACAGGAGGACGACGACGGCCCCCTGGTGGGACCCCCTCCACCTCCCCCATCGCAACAACAACCCGATGACGACGGCGAGATGTTTGGCCCGCCCCCGCCGCCCCCTGCCTCCAATTTCAATGACTCGGACTCCGAACAAGATTCCGATCAAGACGATGTCGGAACCCGGTTCAGAATCCCCCTCAGCAACGAGATTGTTCTCAAGGGCCACACCAAGGTTGTGTCAGCTCTTGCGGTGGATCATTCTGGGTCGAGAGTGCTTTCTGGAAGCTATGATTACACGGTGCGTATGTATGATTTTCAAGGGATGAACTCTCGCTTGCAATCATTTCGACAATTGGAGCCATTCGAAGGCCACCAAGTTCGGAATTTGAGCTGGAGTCCCTCTGCGGATCGGTTTCTCTGCATTACTGGATCAGCTCAAGCTAAGATTTATGATCGTGATGGTCTCACTTTGGGAGAGTTTATGAAGGGAGACATGTATATTCGTGATCTGAAGAATACTAAGGGTCACATTACAGGATTGACATGGGGGGAGTGGCACCCGAAAGCTAAAGAGACCATTTTAACATCTTCCGAGGACGGGTCGCTGCGGATATGGGATGTGAATGACTTCAAGAGTCAGAAGCAGGTTATTAAACCAAAGCTTTCGAGACCTGGAAGAGTTCCTGTGAACACATGTACATGGAATCATGATGGTAAATGCATTGCTGGTGGTATCGGAGATGGTTCTATACAGATTTGGAATATTAAACCTGGATGGGGGAGTAGGCCAGATATACACATTGAAAAAAGTCATGAGGATGATATTACCGGTCTGACATTTTCTAGTGATGAGAGAATCTTATTATCAAGGAGCTTTGATGGTTCATTGAAGGTATGGGATCTGCGCAAAACAAAGGATGCATTAAAGGTGTTTGAGGATCTGCCAAATAACTATGCACAAACAAATATTGCCTTCAGTCCTGATGAGCAACTCTTTTTTACTGGAACATCTGTTGAAAGGGAGAGCACCACGGGAGGTTTATTGTGCTTCTTTGATAGATTAAATCTTGACCTTGTTTCTAGAGTTGGCATTGCCCCGACTTCTAGTGTTATTCGGTGTTCTTGGCATCCCAAACTGAATCAGATCTTTGCAACTGTTGGTGATAAAAGCCAAGGAGGGACTCACATACTATATGATCCAACCATCAGCGAGAAAGGAGCTCTTGTTTGCGTTGCACGGGCACCAAGGAAAAAATCAGTTGATGACTTCGAAGCAAAACCTGCAATTCATAATCCTCATGCCTTACCGCTGTTCAGAGATCAGCCAAGCCGCAAGCGTCAACGAGAGAAAATTTTAAAGGATCCATTGAAGTCCCATAAGCCTGAACTACCCATGAATGGACCTGGCTTTGGTGGGCGAGTTGGTACCAGTCAAGGAAGCTTGCTCACCCAGTATCTACTAAAGCAAGGGGGTATGATTAAGGAGACATGGATGGAGGAAGATCCAAGGGAAGCTATTCTAAAATATGCTGATGTTGCTAAAAAGGATCCAAAGTACATTGCTCCAGCATATGCAGAAACCCAACCTGAGCCTGTGTATGCGAAGTCAGATTCTGAGGATGAAGAGAAATGA 1839 0.4747 MEEDGEIYDGARAQFPLSFGKQSKSQTPLEAIHNATRRSNSKTTTDFPPVSSSSKEWLSSLRPSKNPTAPPPPEQEDDDGPLVGPPPPPPSQQQPDDDGEMFGPPPPPPASNFNDSDSEQDSDQDDVGTRFRIPLSNEIVLKGHTKVVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPFEGHQVRNLSWSPSADRFLCITGSAQAKIYDRDGLTLGEFMKGDMYIRDLKNTKGHITGLTWGEWHPKAKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLSRPGRVPVNTCTWNHDGKCIAGGIGDGSIQIWNIKPGWGSRPDIHIEKSHEDDITGLTFSSDERILLSRSFDGSLKVWDLRKTKDALKVFEDLPNNYAQTNIAFSPDEQLFFTGTSVERESTTGGLLCFFDRLNLDLVSRVGIAPTSSVIRCSWHPKLNQIFATVGDKSQGGTHILYDPTISEKGALVCVARAPRKKSVDDFEAKPAIHNPHALPLFRDQPSRKRQREKILKDPLKSHKPELPMNGPGFGGRVGTSQGSLLTQYLLKQGGMIKETWMEEDPREAILKYADVAKKDPKYIAPAYAETQPEPVYAKSDSEDEEK* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0974 612 Pfam WD domain, G-beta repeat 139 173 IPR001680 GO:0005515
Lja1g0974 612 Pfam WD domain, G-beta repeat 297 323 IPR001680 GO:0005515
Lja1g0974 612 Pfam WD domain, G-beta repeat 337 369 IPR001680 GO:0005515
Lja1g0974 612 Pfam WD domain, G-beta repeat 240 275 IPR001680 GO:0005515
Lja1g0974 612 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 242 277 - -
Lja1g0974 612 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 182 IPR001680 GO:0005515
Lja1g0974 612 MobiDBLite consensus disorder prediction 65 112 - -
Lja1g0974 612 Gene3D - 229 470 IPR015943 GO:0005515
Lja1g0974 612 SMART WD40_4 330 369 IPR001680 GO:0005515
Lja1g0974 612 SMART WD40_4 285 323 IPR001680 GO:0005515
Lja1g0974 612 SMART WD40_4 183 220 IPR001680 GO:0005515
Lja1g0974 612 SMART WD40_4 134 173 IPR001680 GO:0005515
Lja1g0974 612 SMART WD40_4 232 275 IPR001680 GO:0005515
Lja1g0974 612 MobiDBLite consensus disorder prediction 590 612 - -
Lja1g0974 612 Gene3D - 88 228 IPR015943 GO:0005515
Lja1g0974 612 CDD WD40 140 459 - -
Lja1g0974 612 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 337 371 - -
Lja1g0974 612 SUPERFAMILY WD40 repeat-like 114 457 IPR036322 GO:0005515
Lja1g0974 612 MobiDBLite consensus disorder prediction 503 533 - -
Lja1g0974 612 ProSitePatterns Trp-Asp (WD) repeats signature. 310 324 IPR019775 -
Lja1g0974 612 MobiDBLite consensus disorder prediction 508 529 - -
Lja1g0974 612 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 141 175 - -
Lja1g0974 612 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 378 IPR001680 GO:0005515
Lja1g0974 612 MobiDBLite consensus disorder prediction 1 128 - -
Lja1g0974 612 ProSiteProfiles Trp-Asp (WD) repeats profile. 242 284 IPR001680 GO:0005515
Lja1g0974 612 ProSitePatterns Trp-Asp (WD) repeats signature. 262 276 IPR019775 -
Lja1g0974 612 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 2 612 - -
Lja1g0974 612 MobiDBLite consensus disorder prediction 18 64 - -
Lja1g0974 612 PRINTS G protein beta WD-40 repeat signature 262 276 IPR020472 -
Lja1g0974 612 PRINTS G protein beta WD-40 repeat signature 356 370 IPR020472 -
Lja1g0974 612 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0974 143 404 Miscellaneous Gene Families AT5G08390 25.468 1.19e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0974 K24752 - gmx:100815380 1060.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0974 1 9652582 9656604 Lja1g0974 1 9652582 9656604 ECH