Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0967 ATGACGGGATTTTCTCGCCCTCGCGATCACAGCACCTCATCTTCCTCCAATTCTAACGCCAGTGGTAGCAATGTCTTTAGTTTGCTTGCACGGAGGGAGATTTCACCCCGAACAAAACATGTGGCAAAATGGCATTGGGGAGGAGCTTCTAAATCAAAATCCAGTTATAACTCTCGATCTAAAAATGTAGTGAGAGATGCAAGGCGCGGACTCCTCGCATGGGTTGAGGCTGATTCATTGCGGCATTTGTCAGCTAAGTATTGTCCTTTATTGCCTCCCCCGCGGTCAACTATTGCCGCAGCATTTAGTCCAGATGGAAAAGTTCTTGCATCCACACATGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAGTTGCTTGAAAGTTTTAGTTGGCCATAGGAGGACGCCTTGGGTGGTTAGGTTCCATCCGTTGCATCCACAAATACTTGCTAGTGGGAGCTTGGATCAAGAGGTTCGATTATGGGATGCTAACACATCAGAGTGCACAATTTCTCATCATTTCTATCGACCCATTGCATCCATTGCTTTTCATGCCAAAGGGGAAATAATTGCCGTTGCATCAGGCCACAAGCTGTATATATGGCATTACAACAAGAAAGGCGAAGCATTCTCACCAATATTTGTGTTGAAGACAAGGCGCTCTCTTCGGGCTGTGCATTTTCATCCACATGCGGCGCCATATCTTCTTACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCCTCAATGACAGAGGCAACATCCCTTGGTTATTTAAAATATCCTCCACCTGCTGTTGTTGTCACAAATGTCCATCCCACGGAACATATTAGTTTACCTTATGTTTCATTACCTTTCTTCATCATGCCTTCATTTACTGTTGACGAGTCAAGAGGAGAGACACTGCATGCTAGTCATGATGTCTCAGTTAGCATGCAAATTGAGTCTTCTGCTCAAGTAGACACAAATGCAACAGAACATGATACTACAGTGTCTCCCATGGATACAGTTTCCGAGATGCCGTCTAGCTCTCAAACTGGTACACAACATCCTGCTCATGCTACTTTCTCTAATGGAATGGGAGTTGGCATCAATAACCTCACAAGGGATGGTATGGAGACTGATGAAACCAAACTTGCTGAAGGAAGCCAACATGGAAACTCTACTAATACCTATTCTCTTAATGGTGTGTTAAATGGACTATCAAGACAGACTGCAAATGGTGGGTTTTTCTCAGAGTTTGGTCAACTTCAGCAGTTATTTTCTTCAAGAGACCCAAGTGGATGGGAGTTGCCTTTTTTGCAAGGATGGTTAATGGGTCAAAGCCAAGCTGGTGTCCCCCCAATGCTTCCTCACATCGGTGCTAGTCGTGACATTCTATCTCAACAGATTGGTTCTTCTGTAAGGGCTTCGAATTTTTCCAGTTCTAATGTTGATGCAGTAATTTCATCTTCAGCAATGCCTGGCAGCACCAGCATACCTGGATCTTCTATGAGATCAGGCTTACGGCATAGTTTTTCACAACCCCATGTACCTGTATCTGAATCTGGCAATCTTGCTGCTTCTGTTAATATCCCACAAGATGGGTCTGATATCCAAGCCATCATGAGTCGAATCCAGTCAGAACTTGCTACATCAGTGGCTGCGGCAGCTGCTGAGTTGCCTTGCACTGTTAAGTTAAGAGTATGGTCGCATGACATAAAAAACCCCTGTGCCCCACTAAATGCTGATAAATGCCGTTTAACCATACCACATGCTGTCCTCTGCAGTGAAATGGGTGCCCATTTTTCACCATGTGGTAGATTTTTAGCTGCCTGTGTTGCATGTATGCTTCCTCGTATAGAAGCTGATCCAGGACTGCAAGCTCCAGTACACCAAGAGTCTGGTCTTTCAAACTCACCAACTCGGCATCCTATCTCAGCACACCAAGTTATGTACGAGCTGCGGATATATTCCCTTGAGGAGGCAACATTTGGATCAGTGCTTGCTTCAAGAGCGATTAGAGCAGCTCATTGTCTGACTTCAATTCAGTTTTCACCTACATCTGAGCACATACTTCTTGCCTATGGTCGACGTCATGGTTCTCTTCTTAAAAGCATTGTCATTGATGGAGAAACAACCTTACCTATATATACAGTTTTAGAGGTATACAGAGTATCGGATATGGAACTTGTTAGGGTGCTTCCTAGTGCTGAAGATGAGGTCAACGTGGCTTGCTTTCATCCTTTTGCCGGGGGAGGACTAGTTTATGGGACAAAGGAAGGAAAGCTTAGGATCCTTAAGTATGATGGTGCTCACGTAGTCAGTGGCACTGGACCGAGTTACTATCCTGAGGAGACCATAATTGGAGTCCGTCCGTGA 2370 0.4473 MTGFSRPRDHSTSSSSNSNASGSNVFSLLARREISPRTKHVAKWHWGGASKSKSSYNSRSKNVVRDARRGLLAWVEADSLRHLSAKYCPLLPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTPWVVRFHPLHPQILASGSLDQEVRLWDANTSECTISHHFYRPIASIAFHAKGEIIAVASGHKLYIWHYNKKGEAFSPIFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSLGYLKYPPPAVVVTNVHPTEHISLPYVSLPFFIMPSFTVDESRGETLHASHDVSVSMQIESSAQVDTNATEHDTTVSPMDTVSEMPSSSQTGTQHPAHATFSNGMGVGINNLTRDGMETDETKLAEGSQHGNSTNTYSLNGVLNGLSRQTANGGFFSEFGQLQQLFSSRDPSGWELPFLQGWLMGQSQAGVPPMLPHIGASRDILSQQIGSSVRASNFSSSNVDAVISSSAMPGSTSIPGSSMRSGLRHSFSQPHVPVSESGNLAASVNIPQDGSDIQAIMSRIQSELATSVAAAAAELPCTVKLRVWSHDIKNPCAPLNADKCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPRIEADPGLQAPVHQESGLSNSPTRHPISAHQVMYELRIYSLEEATFGSVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRILKYDGAHVVSGTGPSYYPEETIIGVRP* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0967 789 MobiDBLite consensus disorder prediction 488 510 - -
Lja1g0967 789 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 1 787 - -
Lja1g0967 789 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 174 IPR001680 GO:0005515
Lja1g0967 789 MobiDBLite consensus disorder prediction 321 363 - -
Lja1g0967 789 ProSitePatterns Trp-Asp (WD) repeats signature. 152 166 IPR019775 -
Lja1g0967 789 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 93 766 IPR011047 -
Lja1g0967 789 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g0967 789 Gene3D - 80 253 IPR015943 GO:0005515
Lja1g0967 789 SMART WD40_4 125 165 IPR001680 GO:0005515
Lja1g0967 789 SMART WD40_4 724 764 IPR001680 GO:0005515
Lja1g0967 789 SMART WD40_4 84 122 IPR001680 GO:0005515
Lja1g0967 789 SMART WD40_4 168 205 IPR001680 GO:0005515
Lja1g0967 789 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 132 170 - -
Lja1g0967 789 Pfam WD domain, G-beta repeat 126 165 IPR001680 GO:0005515
Lja1g0967 789 Pfam WD domain, G-beta repeat 99 122 IPR001680 GO:0005515
Lja1g0967 789 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 1 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0967 Lja-Chr1 9578135 9585980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0967 63 238 Miscellaneous Gene Families AT5G08390 29.032 9.45e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0967 - K17985 gmx:100817857 1325.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0967 1 9578135 9585980 Lja1g0967 1 9578135 9585980 ECH