LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g0964	ATGTCCTGTGAATCTTCTCTTCCTGAAAACTCCATTGTTGTGGGGTGTGGAGCAGTGGGCGTGGATTTTTTGGCTACTGTTGCTGCTTTTCCTAAACCAGATTCCAAAATCAGAAGCACCTCCTTCAAGATTCAAGGAGGTGGCAATGCAGGCAATGCCTTAACCTGTGTCTCTCGCTTGGGCCTCAAGCCAAGGATCATCTCCAAGGTTGCAGATGACACTCAGGGCAGGAGCATACTAGATGAACTGCAGGCTGATGGTGTAGATACTTCCTTTATGGTGGTATCTAAGGAAGGCACTTCACCCTTTACCTATATCATTGTAGACAGCCAAACTAAGTCCCGTACTTGTATACATACCCCAGGATTTCCTCCATTGAAGCCAGTTGAACTTCCTGAATCAAGTTTGTTATCTGCATTGGATGGAGCAAGAATTGTTTATACTGATGGGAGATTACATGAAACTGCTCTAGTTGTAGCAAACGAGGCAGTTAAGAAGAACATACCTATCTTAATGGATGCCGAAAAGCTGAGAGAAGGGTTGGATGAGCTCCTGAAATTTGTTGATTATGTTGTATGTGCTGCACAGTTTCCGCAGGTATGGACAGAGGCATCCACAGTTCCTAGAGCACTTGTTTCTATGCTTTTAAGGTTGCCCAAAGTCAAATTTGTGATTGTAACTTTGGGAAAAGATGGTTTCATAATGCTTGAGAGAAGTGTTAATGATGTGGGTCTTTCCGCAGAAGAAGAGGATGTTGACAAATTACTGGAATCTCTGGAGATAAGAAAGAATGGGAGCATATACCACCCGGCCTGCATATCATCATCAGTGAAGAAATTGCGGGCAGAAGGTATAGGATCACTTTTTGGTCAGTTATACGTTGGAACAGCTGAGAACATACCACCATCAGAGCTTATCGACACTACCGGTGCTGGAGACGCATTTGCTGGAGCTATTCTTTATGCTATCTGTGCCAACTTTACTAGAGAGAAAATGCTATGCTTTGCTGCTAATGTGGCAGCTGCCAAATGCAGAGCTCTAGGAGCAAGAACTGGTCTTCCTCACCACACAGACCCGCGCCTAGCACCCTTCATATCATGCAAATCTAGTTCTTTAAAACGAAGCGGTAGCTTTCATCGTCTTCTTCAGTTCTCACTTCACTGTATCAGTCACTTCGGAAACCGTCGCAACAACCGTTCTCTTCTCTCTCTGATGGCGTGCATGGCGAACCCGTTCCTCCACTCGCCTTCATCCTCTTCTCCTCAATTCCCTCATCTTCATCGCCGCTTCCATTCCAACTCAATGCGATTTCACCGCAACACGAGTTTCGCCACCAAAATCAAAATGTCCTCCGCCTCCGACTCCCTCCCTCCTGAAAACGGCGTCGTCGTGGTTGGGTGCGGAATGACGACCGTGGATTTCTTGGCCACCGTCGATGGATATCCGAAGCCAGACGACAAGGTGCGAACGACGTCGTTCAAGGTTCAAGGAGGCGGCAATGCCGGTAATGCTGTGACTTGTGCTGCTCGACTCGGCTTGAAACCCAAACTCATCTCCAAGGTTGCAGATGATGCGCAGGGGAAGAGCATATTGAAGGAGCTAGAAGCTGATGGTGTTGATACTTCCTGCATTGTTGTATCCAAGGGTGGAAGTTCAACGTTTTCATATATACTGGTAGACAGCCAAAAGAAAACGCGCACAAGTATTTACACCCCTGGAGATCCTCCCCTGATGCCAGATGATCTGTCCCATTCAACGTTATTATCTGCATTTGATGAAGCAAGATTAGTTTATTTTGATGGAATGTCTACTGAAACTGCTCTATTTGTTGCACAAGAGGCAGCTCGCAGTAATATTCCTATTTTAGTTGAGGCAGAATCACCCAGGGAAGGGTTGGACGAGCTCCTGAAGCTTGCTGATTTTGCTGTATGCTCAGCTAGGTTTCCACAGGCTTGGACACAGGCACCCTCTATCCCCAGTGCACTGGTTTCCATGCTTTTAAGATTGCCAAATATCAAATTTGTGATTGTGACTTTGGGTGCAGATGGTTGTCTAATGTTGGAAAGAAGTACAACTGAGGATGCTGACATAGAAGAAAGGGATGTAGAGAGCTTCATAGAATTCTTATACAAAGGGAAAGATGATAGTTCGGCTATCCCAACCTGTATATCATCGGTAGTGGCTAAATTCAGAACAAATGGAATAGGAACAATTTGTGGGAGATTCTTTATTGGAACAGCAGAGAAGATACCAGATTCTGAGCTGGTGGACACAACTGGTGCTGGAGATGCATTTATTGGAGCCATTATTTATGCTATCTGCGCCAACATGGCACCAGAGAAAATGTTGCCGTTTGCTGCTCAAGTGGCAGCTGTCAAGTGTAGAGCTTTGGGAGCTCGAACTGGTCTTCCACATCGTACGGATCCACACTTGGCATCCTTTATACGATAG	2451	0.4578	MSCESSLPENSIVVGCGAVGVDFLATVAAFPKPDSKIRSTSFKIQGGGNAGNALTCVSRLGLKPRIISKVADDTQGRSILDELQADGVDTSFMVVSKEGTSPFTYIIVDSQTKSRTCIHTPGFPPLKPVELPESSLLSALDGARIVYTDGRLHETALVVANEAVKKNIPILMDAEKLREGLDELLKFVDYVVCAAQFPQVWTEASTVPRALVSMLLRLPKVKFVIVTLGKDGFIMLERSVNDVGLSAEEEDVDKLLESLEIRKNGSIYHPACISSSVKKLRAEGIGSLFGQLYVGTAENIPPSELIDTTGAGDAFAGAILYAICANFTREKMLCFAANVAAAKCRALGARTGLPHHTDPRLAPFISCKSSSLKRSGSFHRLLQFSLHCISHFGNRRNNRSLLSLMACMANPFLHSPSSSSPQFPHLHRRFHSNSMRFHRNTSFATKIKMSSASDSLPPENGVVVVGCGMTTVDFLATVDGYPKPDDKVRTTSFKVQGGGNAGNAVTCAARLGLKPKLISKVADDAQGKSILKELEADGVDTSCIVVSKGGSSTFSYILVDSQKKTRTSIYTPGDPPLMPDDLSHSTLLSAFDEARLVYFDGMSTETALFVAQEAARSNIPILVEAESPREGLDELLKLADFAVCSARFPQAWTQAPSIPSALVSMLLRLPNIKFVIVTLGADGCLMLERSTTEDADIEERDVESFIEFLYKGKDDSSAIPTCISSVVAKFRTNGIGTICGRFFIGTAEKIPDSELVDTTGAGDAFIGAIIYAICANMAPEKMLPFAAQVAAVKCRALGARTGLPHRTDPHLASFIR*	817

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g0964	816	Gene3D	-	12	351	IPR029056	-
	Lja1g0964	816	PRINTS	Ribokinase signature	675	686	IPR002139	GO:0016301
	Lja1g0964	816	PRINTS	Ribokinase signature	493	512	IPR002139	GO:0016301
	Lja1g0964	816	PRINTS	Ribokinase signature	466	487	IPR002139	GO:0016301
	Lja1g0964	816	PANTHER	PFKB FAMILY CARBOHYDRATE KINASE	416	815	-	-
	Lja1g0964	816	PANTHER	PFKB FAMILY CARBOHYDRATE KINASE	6	366	-	-
	Lja1g0964	816	Pfam	pfkB family carbohydrate kinase	17	239	IPR011611	-
	Lja1g0964	816	Pfam	pfkB family carbohydrate kinase	748	805	IPR011611	-
	Lja1g0964	816	Pfam	pfkB family carbohydrate kinase	297	354	IPR011611	-
	Lja1g0964	816	Pfam	pfkB family carbohydrate kinase	468	692	IPR011611	-
	Lja1g0964	816	ProSitePatterns	pfkB family of carbohydrate kinases signature 2.	307	320	IPR002173	GO:0016773
	Lja1g0964	816	PANTHER	PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN	416	815	-	-
	Lja1g0964	816	PANTHER	PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN	6	366	-	-
	Lja1g0964	816	SUPERFAMILY	Ribokinase-like	464	807	IPR029056	-
	Lja1g0964	816	SUPERFAMILY	Ribokinase-like	13	356	IPR029056	-
	Lja1g0964	816	CDD	ribokinase_group_B	12	355	-	-
	Lja1g0964	816	CDD	ribokinase_group_B	463	805	-	-
	Lja1g0964	816	Gene3D	-	462	801	IPR029056	-
	Lja1g0964	816	ProSitePatterns	pfkB family of carbohydrate kinases signature 2.	757	770	IPR002173	GO:0016773

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g0964	Lja-Chr1	9553434	9564793	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g0964	-		-	zju:107426447	758.444

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g0964	1	9553434	9564793	Lja1g0964	1	9553434	9564793	ECH