Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0955 ATGGAGGAAGCGCTGGAACTCGCACGCGCCAAGGACACCAAGGAGAGGATGGCGGGCGTCGAGCGTCTCTACCAGCTTCTAGAATCTTCCAGAAAGAGCCTCACCTCCTCCGAAGTCACCACACTCGTCGACTCCTGCTACGATCTCTTGAAGGACAACAACTTCCGCATCTCGCAGGGCGCGCTTCAGGCACTCGCCTCCGCCGCCATCCTCTCCGGCGAGCACTTCAAGCTCCACTTCAACGCCCTCCTTCCCGCCGTCGTCGACCGTCTTGGCGACGCCAAACAGCCTGTTCGCGACGCCGCACGGCGGCTCTTGCTCACACTCATGGAGGTTTCTTCTCCTACAATAATTGTTGAAAGAGCAGGGTCCTGTGCCTGGGCACACAAAAGCTGGAGAGTCAGAGAGGAGTTTACACGAACTGTCACATCTGCAATTAATCTATTTGCATCTACTGAGCTTCCGCTTCAACGGGCTATCCTCCCTCCTGTATTGCTGTTGCTGAATGATCCAAATCCTGCTGTTAGGGACGCAGCTATTTTGTGTATTGAGGAGATGTACACACAAGCTGGGTCTCAATTTCGTGATGAACTTCACCGCCATAATCTTCCTTCATCTTTGGTGAAAGATATTAATGCTAGGCTTGAGGGAATTCAACCAAAAGTTCGATCCTCAGATGGTATTCCAAGTGGTTATGCTACTGGCGAAGTTAAGCCTTTGAGTGTTACTACCAAGAAAGGTAGTCCGAAGGCCAAAAATTCATCAAGGGAGACGTCTCTTTTTGGAGGAGAAGGTGATATCACTGAGAAACCCATAGACCCTATCAAGGTATACTCAGATAAGGAGTTGGTCAGGGAAATTGAGAAGATTGCATCTACCCTTGTGCCTGAGAAAGACTGGTCAATTCGTATTGCTGCTTTGCAGAGAGTTGAAGGTCTTGTTCTAGGAGGTGCTGCTGATTATCCATGTTTTCGTGGAGTCCTGAAGCAACTTGTTGGACCATTAAGTACCCAACTATCAGACAGAAGGTCTACCATTGTGAAGCAGGCTTGCCATTTATTGTGCTTTTTGTCAAAGGAGCTCTTGGGTGATTTTGAAGCATGTGCTGAAACGTTTATACCAGTCCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTTCCGATAACTGCATAAAAACGATGTTGCGCAACTGTAAAGTTGCTCGTGTGCTTCCCCGTATAGCTGACTGTGCAAAAAATGATCGCAATGCAGTACTTCGTGGAAGGTGTTGCGAATATGCTCTTTTGGTCCTAGAACATTGGCCAGATGCACCTGAAATTCACCGGTCAGCTGATTTATATGAGGATATGATAAAGTGTTGTGTTTCAGACGCAATGAGTGAGGTACGATCTACTGCAAGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGTTCTCGTCGCCTATTTTCATCCTTTGATCCTGTAATTCAACGGTTAATAAATGAAGAAGATGGAGGAATACATAGGCGACATGCTTCACCTTCCATTCGGGATAGAGGTGCGCTGATGTCACTACCCAGTCAGGCCACTGCTCCCTCAAATCTACCTGGTTATGGAACTTCTGCTATTGTTGCAATGGACAGAAGTTCAAATTTATCATCAGGGACCTCTATCTCCTCTGGTGTATTTCTTTCACAAGCTAAGTCACTTGGTAAGGGTACGGAACGTAGTTTGGAAAGTGTGTTGCATGCAAGTAAACAGAAGGTCAGTGCTATTGAAAGCATGCTTAGAGGCTTGGATTTGTCTGATAAGCATAATTCATCTTCTCTCCGGTCATCAAGTTTGGATCTAGAAGTTGACCCTCCATCATCTCGTGATCCACCTTTCCCTGCTGTTGTGTCTGCATCTAATCATCTGCCAAACTCTTCAAGAACAGAATCGACTGCTTCTAGTGTCATTAAAGGTAGTCACCGGAATGGTGGTCTGGGTTTGTCTGATATAATCACTCAAATTCAAGCTTCCAAAGATTCTGCCAAGTTATCATATCATAGTAATGTTGGTGTTGAATCATCATCGTCGTCTTATTTGACTAAAAGGCCTTCTGAACGACTAGAAGAAAGACGTTCTGCTGATGACGGTAGTGATATTAGGGAGGCTAGGCGATTTATGAACCACAACACTGATAAGCAGTACTTTGATGCCCTTTATAGAGATGGGAACTTTAGGGATTCACATAATAGTTACGTGCCTAATTTTCAGAGGCCTCTATTGAGAAAGAATGTAGCTGGACGTATGTCTGCTGGCCGGAGGAGGAGTTTTGATGAAAACCAGCTATCTCTTGGAGAGATGTCAAGTTATGCGGATGGTCCGACATCTCTTCATGAAGCATTGAGTGAAGGACTTCGTTCAGGCTCTGACTGGTCTGCTAGGGTTGCTGCCTTTAACTATGTTCACTCTTTGTTACAGCAAGGTCCAAAGGGAACTATTGAAGTTGTGCAGAACTTTGAGAAGGTAATGAAGTTGTTTTTCCAGCACTTAGATGATCCCCACCATAAAGTTGCACAAGCTGCTCTTTCAACACTTGCAGATATTGTTCCAGCATGCCGAAAGCCTTTTGAGGGTTACATGGAAAGAATATTACCCCATGTGTTTTCTCGGTTAATTGACCCTAAAGAGCTTGTTAGACAGCCATGTTCGACAACTTTGGAAGTTGTTAGCAAAACTTACAGTGTTGATTCTCTCTTGCCTGCATTGTTACGCTCACTTGATGAACAAAGGTCTCCAAAGGCTAAGTTGGCTGTTATTGAATTCGCAATCAGTTCTTTTAACAAACATGCAATGAATGCCGAAGGTGCTGGTAATATTGGCATCCTAAAATTATGGCTTGCTAAGCTAACCCCATTAGTTTATGACAAAAATACAAAGCTTAAAGAAGCAGCTATCACATGCATTATATCTGTGTACTCCCACTTTGATTCAGCTGCAGTTCTTAATTTTATTCTTAGTTTGTCAGTTGAAGAACAAAATTCTTTGAGACGAGCCCTTAAACAATACACCCCTCGCATTGAAGTAGACCTAATGAACTATCTGCAGAGCAAGAAAGAGAGACAGCGTTCTAAGGCTTCCTATGATCCATCTGATGTTGTGGGAACATCCTCTGACGATGGACATGTTGGTTTCTCCCGGAAAGCTCATTACCTTGGAAGGTATTCCGTTGGTTCCCTTGACAGTGATGGTGGCAGGAAGTGGAGTTCCCAAGATTCAATGCTGATGAAAGCCAGTCTTGGTCAAGCATCTTCTATTGAAACTCAGGAACATCCTAACCATAATATTGAGGCTGATGCTAATAGTGGTTGTCATGGTTCAAAAACTGAAGATCTTGCTTATTCTGTCTATCCAAGGGGTCAAAACTTTAGTGCTCAAACTAGCCAACTTGGACATGTGGACAGTAGCATGAACTTTGAGGGTCTTTCAACTCCTCGTCTAGATGTTAACAGTGTGATGTCATTAGATCATTTAAATGCTTCTGAAGGTTATGTACATGATAAAGAACATCCTTCTGAAGTGGAACTTAATCATCATTCAGTTGAAGCTGTAAATATTAACTCCATGGTAGACACAGGACCCAGCATTCCTCAAATTCTTCATATGATATGCAGTGGGGGTGATGGAAGCCCTATTTCAACTAAACAGACTGCTCTTCAACAGCTAGTTGAAGCTTCTATAGCAAACGACCATTCTGTTTGGACCAAGTACTTCAATCAAATTTTGACAGCTGTGCTTGAGGTACTGGATGATTCGGATTCCTCAGTCAGAGAGCTTGCTCTATCATTGATAGTTGAAATGCTTAAAAACCAGAAAGATACCATGGAGAATTCAGTTGAGGTTGTAATTGAGAAGCTGCTTCATGTTACTAAGGATATCATTCCAAAGGTCTCAAATGAAGCAGAGCACTGCCTAACGATTGTTTTATCTCATTATGATCTATTCAGATGTTTAAGTGTTATTGTCCCTCTACTGGTAACTGAGGATGAGAAAACACTTGTCACTTGCATAAATTGCTTAACAAAGCTTGTGGGCAGGCTCTCTCAGGAGGAATTGATGGCTCAGTTACCCTCATTTCTGCCTGCTCTTTTTGAAGCCTTTGGAAACCAGAGTGCAGATGTTCGTAAGACTGTTGTTTTCTGTCTCGTGGATATTTATATCATGCTTGGGAAAGCATTCTTGCCATATCTGCAAGGCCTTAACACCACACAGTTGAAGCTCGTCACCATATATGCAAATCGAATCTCACAAGCCAGGACAGGCAAAGCAATTGATGCTATTCAAGATTAG 4335 0.4355 MEEALELARAKDTKERMAGVERLYQLLESSRKSLTSSEVTTLVDSCYDLLKDNNFRISQGALQALASAAILSGEHFKLHFNALLPAVVDRLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSCAWAHKSWRVREEFTRTVTSAINLFASTELPLQRAILPPVLLLLNDPNPAVRDAAILCIEEMYTQAGSQFRDELHRHNLPSSLVKDINARLEGIQPKVRSSDGIPSGYATGEVKPLSVTTKKGSPKAKNSSRETSLFGGEGDITEKPIDPIKVYSDKELVREIEKIASTLVPEKDWSIRIAALQRVEGLVLGGAADYPCFRGVLKQLVGPLSTQLSDRRSTIVKQACHLLCFLSKELLGDFEACAETFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKVARVLPRIADCAKNDRNAVLRGRCCEYALLVLEHWPDAPEIHRSADLYEDMIKCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPVIQRLINEEDGGIHRRHASPSIRDRGALMSLPSQATAPSNLPGYGTSAIVAMDRSSNLSSGTSISSGVFLSQAKSLGKGTERSLESVLHASKQKVSAIESMLRGLDLSDKHNSSSLRSSSLDLEVDPPSSRDPPFPAVVSASNHLPNSSRTESTASSVIKGSHRNGGLGLSDIITQIQASKDSAKLSYHSNVGVESSSSSYLTKRPSERLEERRSADDGSDIREARRFMNHNTDKQYFDALYRDGNFRDSHNSYVPNFQRPLLRKNVAGRMSAGRRRSFDENQLSLGEMSSYADGPTSLHEALSEGLRSGSDWSARVAAFNYVHSLLQQGPKGTIEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIVPACRKPFEGYMERILPHVFSRLIDPKELVRQPCSTTLEVVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSFNKHAMNAEGAGNIGILKLWLAKLTPLVYDKNTKLKEAAITCIISVYSHFDSAAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRSKASYDPSDVVGTSSDDGHVGFSRKAHYLGRYSVGSLDSDGGRKWSSQDSMLMKASLGQASSIETQEHPNHNIEADANSGCHGSKTEDLAYSVYPRGQNFSAQTSQLGHVDSSMNFEGLSTPRLDVNSVMSLDHLNASEGYVHDKEHPSEVELNHHSVEAVNINSMVDTGPSIPQILHMICSGGDGSPISTKQTALQQLVEASIANDHSVWTKYFNQILTAVLEVLDDSDSSVRELALSLIVEMLKNQKDTMENSVEVVIEKLLHVTKDIIPKVSNEAEHCLTIVLSHYDLFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNTTQLKLVTIYANRISQARTGKAIDAIQD* 1445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0955 1444 ProSiteProfiles HEAT repeat profile. 83 121 IPR021133 -
Lja1g0955 1444 ProSiteProfiles HEAT repeat profile. 160 198 IPR021133 -
Lja1g0955 1444 Coils Coil 1280 1300 - -
Lja1g0955 1444 Gene3D - 1 221 IPR011989 -
Lja1g0955 1444 Gene3D - 1226 1436 IPR011989 -
Lja1g0955 1444 Pfam CLASP N terminal 285 500 IPR024395 -
Lja1g0955 1444 Pfam CLASP N terminal 801 995 IPR024395 -
Lja1g0955 1444 Gene3D - 796 1019 IPR011989 -
Lja1g0955 1444 MobiDBLite consensus disorder prediction 226 264 - -
Lja1g0955 1444 MobiDBLite consensus disorder prediction 689 718 - -
Lja1g0955 1444 MobiDBLite consensus disorder prediction 635 655 - -
Lja1g0955 1444 MobiDBLite consensus disorder prediction 602 619 - -
Lja1g0955 1444 PANTHER PROTEIN, PUTATIVE-RELATED 28 1436 - -
Lja1g0955 1444 PANTHER CLASP 28 1436 - -
Lja1g0955 1444 MobiDBLite consensus disorder prediction 1033 1055 - -
Lja1g0955 1444 SUPERFAMILY ARM repeat 293 1434 IPR016024 -
Lja1g0955 1444 Pfam HEAT repeat 160 187 IPR000357 GO:0005515
Lja1g0955 1444 MobiDBLite consensus disorder prediction 602 655 - -
Lja1g0955 1444 SUPERFAMILY ARM repeat 5 401 IPR016024 -
Lja1g0955 1444 MobiDBLite consensus disorder prediction 699 718 - -
Lja1g0955 1444 MobiDBLite consensus disorder prediction 246 261 - -
Lja1g0955 1444 SMART TOG_3 282 514 IPR034085 -
Lja1g0955 1444 SMART TOG_3 3 224 IPR034085 -
Lja1g0955 1444 SMART TOG_3 782 1024 IPR034085 -
Lja1g0955 1444 SMART TOG_3 1200 1436 IPR034085 -
Lja1g0955 1444 Pfam Vacuolar 14 Fab1-binding region 1230 1317 - -
Lja1g0955 1444 Gene3D - 267 506 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0955 Lja-Chr1 9432979 9447066 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0955 K16578 - gmx:100820523 2486.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0955 1 9432979 9447066 Lja1g0955 1 9432979 9447066 ECH