Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0914 ATGAGAAATATAAAATTATATCAAAACCAGAGGCCATGTTGTCTTCTACGCGTTGTCGAGGATCTTGGAATGGGGCACCCACCCCTAACCCCATCCCCACCGTCGTCCACCCTCTTTCTCTCCTCTTCCGGCAAGGCTCTCGTCGTCTCCAACTCCAACAAATCCCTCGTCGTTTCCAATTCCGACAAGCGCCTCGGCACCCCTAGGAAGAAGTATGTCAAGCAGGTCACCGGCCGCCATAACGACACCGAGCTCCACCTCGCTGCACAGCGAGGTGACGCCGCATCCATCCGGCAGATCCTCGGCGATATTGATGCTCTCATGACGGGGACCCTCAGCGGTGCTGAGTTTGATGCTGAGGTCGCTGATATCAGGTCCGCTATTGTGAACGAGGTCAATGAGCTGGGCGAGACCGCTCTGTTCACCGCCGCTGAAAAGGGTCACCTCAATGTCGTCAAGGAGCTCCTCCCTTATACCACCACCGAAGCACTTTCCTTCAAAAACCGCTCTGCCTTTGATCCCCTGCACATTGCAGCTAGCCAAGGCCATCAAGCTATTGTGCAGGTGCTGCTGGACCATGACCCTGAGCTAATAAAGACGTTTGCGCAGTCAAATGCAACTCCTCTCGTCTCTGCGGCTACACGAGGACATGCGGGTGTTGTTGATCTGTTGCTGTCACGGGATCCTAGCCAGTTGGAGATAGCTAGATCCAATGGGAAGAATGCGCTCCATTTAGCTGCACGCCAAGGACATGTTGATGTTGTTAGGATATTGCTGGGGAAGGACCCGCAACTTGCTCGGAGGACTGATAAGAAAGGACAGACTGCACTTCACATGGCTGTCAAAGGTGTTAGCTGTGAAGTGGTGAAGCTGATTCTTGCTGCAGATGCTGCAATTGTCATGCTCCCTGATAGGTTTGGCAATACTGCATTGCATGTAGCCACCAGGAAGAAGAGGGTAGAGATAGTGAATGAGCTGTTACTTATTCCCGACACTAATGTGAATGCCCTGACTAGAGACCACAAAACAGCTCTTGACCTTGCGGAAGCGCTTCCAATATCCGAAGAAATTTTGGAGGTTAAAGAGTCCCTTATTCGTTATGGTGCAAATGTGAGTGGGATTGCCAAAGACTTAAAAAAGTTGCACAAGGCTGGAATCAACAATGCTACCAACTCAGTAACGGTGGTAGCCGTGCTATTTGCAACGGTTGCATTTGCTGCACTTTTCACAGTTCCTGGTGGGGATGATAACACTGGAAGGGCTGTGATGGTACACACTGTGTCTTTCAAGTCTTTCTTCCTGTCTAATGCCATTGCACTTTTTACTTCATTGGCTGTGGTGGTAGTTCAAATCACACTTGTAAGAGGAGAGACAAAGTCGGAGAAGAGGGTTGTGGAGGTGATCAATAAGATGATGTGGTTAGCCTCTGTCTGCACCACAGTTTCATATATTTCTGCATCTTATATAGTAGTTGGCCGGCGCAGCGAGTGGGCTGCAATCCTTGTCACTGTTGTTGGGGGGATCACAATGGGTGGTGTTCTTGGTACCATGACATATTATGTGGTGAAATCCAAACGTTCCCTAAGGTTGAGGAAGAAAGAGAAGTTATTATCAAGGGCTGGAACAAACTCATGGCGTCTCTCGGAAACTGATTCAGAAGCTCATCAAATTTATGCCATTTGA 1683 0.4932 MRNIKLYQNQRPCCLLRVVEDLGMGHPPLTPSPPSSTLFLSSSGKALVVSNSNKSLVVSNSDKRLGTPRKKYVKQVTGRHNDTELHLAAQRGDAASIRQILGDIDALMTGTLSGAEFDAEVADIRSAIVNEVNELGETALFTAAEKGHLNVVKELLPYTTTEALSFKNRSAFDPLHIAASQGHQAIVQVLLDHDPELIKTFAQSNATPLVSAATRGHAGVVDLLLSRDPSQLEIARSNGKNALHLAARQGHVDVVRILLGKDPQLARRTDKKGQTALHMAVKGVSCEVVKLILAADAAIVMLPDRFGNTALHVATRKKRVEIVNELLLIPDTNVNALTRDHKTALDLAEALPISEEILEVKESLIRYGANVSGIAKDLKKLHKAGINNATNSVTVVAVLFATVAFAALFTVPGGDDNTGRAVMVHTVSFKSFFLSNAIALFTSLAVVVVQITLVRGETKSEKRVVEVINKMMWLASVCTTVSYISASYIVVGRRSEWAAILVTVVGGITMGGVLGTMTYYVVKSKRSLRLRKKEKLLSRAGTNSWRLSETDSEAHQIYAI* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0914 560 SUPERFAMILY Ankyrin repeat 85 370 IPR036770 -
Lja1g0914 560 ProSiteProfiles Ankyrin repeat profile. 306 339 IPR002110 GO:0005515
Lja1g0914 560 ProSiteProfiles Ankyrin repeat region circular profile. 170 197 - -
Lja1g0914 560 ProSiteProfiles Ankyrin repeat profile. 272 304 IPR002110 GO:0005515
Lja1g0914 560 Pfam Domain of unknown function 385 490 IPR026961 -
Lja1g0914 560 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 369 553 - -
Lja1g0914 560 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 47 368 - -
Lja1g0914 560 Gene3D - 68 231 IPR036770 -
Lja1g0914 560 ProSiteProfiles Ankyrin repeat profile. 170 197 IPR002110 GO:0005515
Lja1g0914 560 ProSiteProfiles Ankyrin repeat region circular profile. 238 259 - -
Lja1g0914 560 Gene3D - 232 402 IPR036770 -
Lja1g0914 560 PANTHER CASKIN 369 553 - -
Lja1g0914 560 PANTHER CASKIN 47 368 - -
Lja1g0914 560 Pfam Ankyrin repeats (3 copies) 204 262 IPR002110 GO:0005515
Lja1g0914 560 Pfam Ankyrin repeats (3 copies) 85 194 IPR002110 GO:0005515
Lja1g0914 560 Pfam Ankyrin repeats (3 copies) 270 334 IPR002110 GO:0005515
Lja1g0914 560 ProSiteProfiles Ankyrin repeat region circular profile. 272 299 - -
Lja1g0914 560 ProSiteProfiles Ankyrin repeat profile. 238 270 IPR002110 GO:0005515
Lja1g0914 560 SMART ANK_2a 238 267 IPR002110 GO:0005515
Lja1g0914 560 SMART ANK_2a 306 336 IPR002110 GO:0005515
Lja1g0914 560 SMART ANK_2a 204 233 IPR002110 GO:0005515
Lja1g0914 560 SMART ANK_2a 135 164 IPR002110 GO:0005515
Lja1g0914 560 SMART ANK_2a 80 109 IPR002110 GO:0005515
Lja1g0914 560 SMART ANK_2a 170 199 IPR002110 GO:0005515
Lja1g0914 560 SMART ANK_2a 272 301 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0914 Lja-Chr1 8963955 8967644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0914 29 560 Miscellaneous Gene Families AT3G09550 69.686 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0914 - - lja:Lj1g3v4578470.1 791.571