Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0913 ATGAAGAAACAGTTGACGGGTTTACGGGGGGATTCTCCCCTGCAATCAGCAATCCGGGATGGAAATTTAGAATTGGTGATGGAAATCATCTCTCAGAGTCAGAAAGATGAAGAGTTGAAAGAGTTGCTTTCCAGGACGAATAACTCTGGTGAAACTGCCTTGTATGTTGCAGCTGAAAATGGTCATCTTGATATAGTGAAGGAATTGATCAGATACCATGATATTGGTTTGGCCAGCTTGAAAGCTAGAAATGGATTTGATGCATTTCATGTTGCTGCTAAAAATGGAAACTTAGAGATATTGAAGGTCCTCATGGAGGCCTTTCCTGAAATTTCAATGACAGTTGATCTGTCAAACACTACTGCATTGCACACTGCTGCAGCACAAGGACATATCCATGTTGTAAATTTTCTCTTGGAGAAAGGTTACAGCCTGATAAGTATTGCAAAAAGCAATGGGAAAACTGTGTTGCATTCGGCTGCAAGAAACGGCCACGTGGAGGTCATCAAGGCCATTCTAAGCAGAGAGCCTGAAATTGCAATGAGAATTGATAAGAAGGGGCAGACAGCACTCCATATGGCAGTTAAAGGACAAAACCTTGAATTGGTGGATGAGCTTGTGACATTGACTCCATCTTCGGTTAATATGGTGGATGCCAAAGGAAACACTGCACTGCATATAGCAACCCGGAAGAGTCGTCTAAAGATTATTCAGAGGTTACTAGATTGCAGTGAAATAGACACAAACGTTATCAATAAATCTGGAGAAACTGCTTTGGATATTGCAGAGAGAAGTAGTCACTTGGAAATTACCAACTCTCTACAAGATCATGGAGCTCAAAATGCTAAGTCCATCAGGTCATCTTCCAGAAACCCAGCCCTTGAACTCAAACGGACTGTGAGTGACATAAAAAGCGGGGTACATAACCAGCTGGAACACACATTTAAAACGCAAAGGCGTATGAAAGGCATAGCCAAGCGAATTAACAAGATGCATGCTGAGGGGCTTAACAATGCAATCAACTCCAATACCGTTGTTGCTGTCCTCATCGCAACAGTGGCTTTCGCTGCCATATTTACTGTCCCAGGCCAGTATCCTAGAAACCCAGAGGAACTCGCTCCTGGAATGTCTCCGGGAGAAGCAAACATTGCTCCGAATACCGAATTCTTGATATTCATGATCTTTGATTCTACTGCCTTATTCATATCATTGGCTGTTGTGGTTGTCCAAACATCTGTGGTTATTATAGACAGGAAGACAAAGAAACAAATGACAGCAGTTATAAATAAGTTAATGTGGATAGCCTGTGTGCTAATTTCTGTGGCATTCATGGCAATGTCTTACATAGTTGTGGGGGATCACAAAGAGTTGGCTATTGCAGCCACAGTTCTAGGAACAGTGATTATGGTAGCTACTCTAGGAACACTCTGTTATTGGGTGATCGCCCACCGCCTTGAAGCATCCAGATTGAGAAGTCAACGGACAATGACAAGCAGCAGGCAGTCATTCGCTATGTCAATGATGTCAGATCATGAGAATGAGTTTAAGACAGTGTACGCTATATAA 1566 0.4253 MKKQLTGLRGDSPLQSAIRDGNLELVMEIISQSQKDEELKELLSRTNNSGETALYVAAENGHLDIVKELIRYHDIGLASLKARNGFDAFHVAAKNGNLEILKVLMEAFPEISMTVDLSNTTALHTAAAQGHIHVVNFLLEKGYSLISIAKSNGKTVLHSAARNGHVEVIKAILSREPEIAMRIDKKGQTALHMAVKGQNLELVDELVTLTPSSVNMVDAKGNTALHIATRKSRLKIIQRLLDCSEIDTNVINKSGETALDIAERSSHLEITNSLQDHGAQNAKSIRSSSRNPALELKRTVSDIKSGVHNQLEHTFKTQRRMKGIAKRINKMHAEGLNNAINSNTVVAVLIATVAFAAIFTVPGQYPRNPEELAPGMSPGEANIAPNTEFLIFMIFDSTALFISLAVVVVQTSVVIIDRKTKKQMTAVINKLMWIACVLISVAFMAMSYIVVGDHKELAIAATVLGTVIMVATLGTLCYWVIAHRLEASRLRSQRTMTSSRQSFAMSMMSDHENEFKTVYAI* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0913 521 Gene3D - 1 145 IPR036770 -
Lja1g0913 521 ProSiteProfiles Ankyrin repeat profile. 220 242 IPR002110 GO:0005515
Lja1g0913 521 SUPERFAMILY Ankyrin repeat 13 279 IPR036770 -
Lja1g0913 521 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Lja1g0913 521 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 1 521 - -
Lja1g0913 521 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Lja1g0913 521 ProSiteProfiles Ankyrin repeat region circular profile. 186 207 - -
Lja1g0913 521 ProSiteProfiles Ankyrin repeat region circular profile. 49 71 - -
Lja1g0913 521 ProSiteProfiles Ankyrin repeat profile. 49 71 IPR002110 GO:0005515
Lja1g0913 521 PANTHER ANKYRIN REPEAT PLANT PROTEIN 1 521 - -
Lja1g0913 521 Gene3D - 146 338 IPR036770 -
Lja1g0913 521 ProSiteProfiles Ankyrin repeat profile. 186 207 IPR002110 GO:0005515
Lja1g0913 521 Pfam Ankyrin repeats (3 copies) 150 215 IPR002110 GO:0005515
Lja1g0913 521 Pfam Ankyrin repeats (3 copies) 81 144 IPR002110 GO:0005515
Lja1g0913 521 Pfam Ankyrin repeats (3 copies) 218 280 IPR002110 GO:0005515
Lja1g0913 521 Pfam Ankyrin repeats (3 copies) 9 75 IPR002110 GO:0005515
Lja1g0913 521 ProSiteProfiles Ankyrin repeat region circular profile. 118 142 - -
Lja1g0913 521 ProSiteProfiles Ankyrin repeat region circular profile. 84 106 - -
Lja1g0913 521 ProSiteProfiles Ankyrin repeat region circular profile. 220 242 - -
Lja1g0913 521 ProSiteProfiles Ankyrin repeat region circular profile. 152 179 - -
Lja1g0913 521 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Lja1g0913 521 SMART ANK_2a 254 284 IPR002110 GO:0005515
Lja1g0913 521 SMART ANK_2a 118 148 IPR002110 GO:0005515
Lja1g0913 521 SMART ANK_2a 84 113 IPR002110 GO:0005515
Lja1g0913 521 SMART ANK_2a 9 38 IPR002110 GO:0005515
Lja1g0913 521 SMART ANK_2a 220 250 IPR002110 GO:0005515
Lja1g0913 521 SMART ANK_2a 186 216 IPR002110 GO:0005515
Lja1g0913 521 SMART ANK_2a 152 181 IPR002110 GO:0005515
Lja1g0913 521 SMART ANK_2a 49 77 IPR002110 GO:0005515
Lja1g0913 521 Pfam Domain of unknown function 334 450 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0913 Lja-Chr1 8956441 8959911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0913 1 521 Miscellaneous Gene Families AT1G07710 62.429 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0913 - - gmx:100802370 828.935