Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0906 ATGCCTCGTTATGATGATAAGCATGACAATACCCGCCTCTATGTGGGTCACTTGTCTTCAAGGACCAGGGAACGTGATCTCGAGAGAGCTTTCAGCAAGTATGGAAGAGTTCGAGGTGTGGATATGAAGCATAATTTCGCCTTTGTTGAATTTAGCGATCCTCGAGATGCTGATGATGCAAGATATAACCTGGATGGTCGTGATGTTGAAGGAAGTCGTATTGTTGTGGAATTTGCCAAAGGGGGTCCTCGCGGTAACCGCGAATACTTGGGTCGAGGTCCACCTCCTGGATCTGGACGCTGCTTCAATTGTGGCCTTGATGGTCATTGGGCCCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGCTACCGATGTGGGGATAGGGGTCATGTAGAAAGGAACTGCAAGAACAGTCCCAAAAAAACGAGTGGCAGACGTGGAAGGAGTTATTCTCGTTCACCGGTCAGGTCTCGTTCCCCTCGTCGTGACAGAAGTCGTGATCGAAGTTATAGCCGAGACCGCAGCTACAGCCGATCAAGATCCCCTATCGGTAGAGAAAAAAGCCCACTTCGTGATGGATCACTCAGTCCTCGCAACAGAAGCCCTGTGCCTAAAAGTAGCCCTCAGCCCTCCAAGACCAGGAAGCATAGTTTATCACCTGACCGAGCTAGCCCACAGAAGAGAGGTGACTCCTCTCCTGCTGAGGATGGGTTGGTCACCCAGCAAGATGGGTCTGACTACAGCAATGGCCATAGAGATAGGAGCAGAAGCCCTGCTAGCCCTGTAAGGGACCGTGAAGGTAGCCTTAAAGCTAATGGTCGCAGTCAGAGCCCTGGCCGAAGTCCAAGGGATGATGACAGGAGCCCCATTGATGATGATGATGGCAACCACCGCCGCTTGCCAAGAGGTAGTGAGTCCCCTTGA 927 0.5167 MPRYDDKHDNTRLYVGHLSSRTRERDLERAFSKYGRVRGVDMKHNFAFVEFSDPRDADDARYNLDGRDVEGSRIVVEFAKGGPRGNREYLGRGPPPGSGRCFNCGLDGHWARDCKAGDWKNKCYRCGDRGHVERNCKNSPKKTSGRRGRSYSRSPVRSRSPRRDRSRDRSYSRDRSYSRSRSPIGREKSPLRDGSLSPRNRSPVPKSSPQPSKTRKHSLSPDRASPQKRGDSSPAEDGLVTQQDGSDYSNGHRDRSRSPASPVRDREGSLKANGRSQSPGRSPRDDDRSPIDDDDGNHRRLPRGSESP* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0906 308 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Lja1g0906 308 SUPERFAMILY RNA-binding domain, RBD 7 100 IPR035979 GO:0003676
Lja1g0906 308 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Lja1g0906 308 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Lja1g0906 308 MobiDBLite consensus disorder prediction 248 271 - -
Lja1g0906 308 PANTHER SPLICING FACTOR, PUTATIVE-RELATED 7 289 - -
Lja1g0906 308 MobiDBLite consensus disorder prediction 200 215 - -
Lja1g0906 308 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 7 289 - -
Lja1g0906 308 MobiDBLite consensus disorder prediction 157 194 - -
Lja1g0906 308 MobiDBLite consensus disorder prediction 130 308 - -
Lja1g0906 308 Gene3D - 2 89 IPR012677 -
Lja1g0906 308 Gene3D - 96 153 - -
Lja1g0906 308 SMART rrm1_1 12 77 IPR000504 GO:0003723
Lja1g0906 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Lja1g0906 308 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Lja1g0906 308 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Lja1g0906 308 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Lja1g0906 308 SUPERFAMILY Retrovirus zinc finger-like domains 91 139 IPR036875 GO:0003676|GO:0008270
Lja1g0906 308 MobiDBLite consensus disorder prediction 280 308 - -
Lja1g0906 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0906 Lja-Chr1 8856637 8859925 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0906 K12896 - gmx:100813237 398.282