Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0905 ATGTTATTGTCGTCTCGAAAGTTGCAAGGAGAAGAAGACGCGCCATCGAAAGTGTTTCTAAAAGAAAGTTTATACAACTTCCGGAAACTAGTTCGAAAGCATATCCACTTCGCAAGGGTTAGGTTTCGAGAGAGAAATCAGCAAACTACCCAAAGAGCTTACAAGGAATCAACAATGCCTCGCTATGATGATAAGTATGGTAACACCCGCCTCTATGTGGGTCGCTTGTCTTCCAGGACGCGTTCCCGTGATCTCGAGCGAGTCTTCAGCAGATATGGAAGAGTTCGAGACGTGGATATGAAGCGTGATTATGCCTTTGTTGAATTTAGCGATCCTCGAGATGCTGATGATGCAAGATATAACTTGGATGGACGTGATGTTGATGGAAGTCGTCTTATTGTTGAATTTGCAAAAGGGGTTCCCCGTGGTTCTCGTGAAGGGGGCGGGGGCCGGGACCGCGACCGGGAATATATGGGTCGTGGTCCACCTCCTGGATCTGGACGCTGCTTTAACTGTGGTATTGATGGCCACTGGGCTCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTATAGATGTGGAGAGAGAGGTCATATAGAAAAGAACTGCAAGAACAGTCCCAAAAAGTTGAGTCGACACCCTAGGAGTGATTCACGTTCACCAGTCAGGTCACGATCTCCTAGGCGTGGCAGGAGCCGGGATCGAAGTTACACCCCAGAGCGCAGCTACAGCCGATCAAGATCCCCAGTCAGAAGAGATCGAAGCCCTTTTCCTGAAGATCGATCAAGGAGTCCTCCCTCCAGGACAAGGAAGCATAGTCTATCTCCTGACCTAGACAGCCCACAGAAGAGAAGTGATGCATCTCCTCCTGGCAATGATAGGTTGGCCACAACCCGAGATGGATCTGACTACAGCGATGATGCCAGGGCGAAGAGTAGAAGCCCCGCAAGGGACCTTGATGATGATAGCCCCAAAGCTGACAATGGGCGTAGCCGCAGTGCTAGCCCTAGGGATGATGATAGGAGCCCCATTGAAGAAGATGATGACAACCACCGTCAATCTCCGTCACCTTAG 1077 0.4995 MLLSSRKLQGEEDAPSKVFLKESLYNFRKLVRKHIHFARVRFRERNQQTTQRAYKESTMPRYDDKYGNTRLYVGRLSSRTRSRDLERVFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYNLDGRDVDGSRLIVEFAKGVPRGSREGGGGRDRDREYMGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRHPRSDSRSPVRSRSPRRGRSRDRSYTPERSYSRSRSPVRRDRSPFPEDRSRSPPSRTRKHSLSPDLDSPQKRSDASPPGNDRLATTRDGSDYSDDARAKSRSPARDLDDDSPKADNGRSRSASPRDDDRSPIEEDDDNHRQSPSP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0905 358 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 64 357 - -
Lja1g0905 358 MobiDBLite consensus disorder prediction 145 159 - -
Lja1g0905 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 132 IPR000504 GO:0003723
Lja1g0905 358 Gene3D - 164 187 - -
Lja1g0905 358 Gene3D - 188 232 - -
Lja1g0905 358 Gene3D - 38 163 IPR012677 -
Lja1g0905 358 ProSiteProfiles Zinc finger CCHC-type profile. 190 206 IPR001878 GO:0003676|GO:0008270
Lja1g0905 358 ProSiteProfiles Zinc finger CCHC-type profile. 168 183 IPR001878 GO:0003676|GO:0008270
Lja1g0905 358 SMART c2hcfinal6 190 206 IPR001878 GO:0003676|GO:0008270
Lja1g0905 358 SMART c2hcfinal6 168 184 IPR001878 GO:0003676|GO:0008270
Lja1g0905 358 Pfam Zinc knuckle 189 206 IPR001878 GO:0003676|GO:0008270
Lja1g0905 358 Pfam Zinc knuckle 168 183 IPR001878 GO:0003676|GO:0008270
Lja1g0905 358 SUPERFAMILY Retrovirus zinc finger-like domains 159 207 IPR036875 GO:0003676|GO:0008270
Lja1g0905 358 SMART rrm1_1 70 135 IPR000504 GO:0003723
Lja1g0905 358 MobiDBLite consensus disorder prediction 202 358 - -
Lja1g0905 358 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 64 357 - -
Lja1g0905 358 MobiDBLite consensus disorder prediction 202 225 - -
Lja1g0905 358 MobiDBLite consensus disorder prediction 138 166 - -
Lja1g0905 358 MobiDBLite consensus disorder prediction 232 280 - -
Lja1g0905 358 MobiDBLite consensus disorder prediction 300 358 - -
Lja1g0905 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 139 IPR000504 GO:0003723
Lja1g0905 358 SUPERFAMILY RNA-binding domain, RBD 63 166 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0905 Lja-Chr1 8850139 8854258 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0905 K12896 - gmx:100813237 417.927