Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0879 ATGGGTTCAGTAGAAAGATCAAAAAAGAAAATTCATTTATGGAAGAAAGCCATGCTCCATTTTTCTCTATGTTTTGTCATGGGGTTCTTCACAGGCTTAGCTCCAACAGGTAAATCTTCTTTCTTTTCTGCAGCCACTAATGGAACAACAAGATTTGCACCACCACCACTTGATGAAATGTCACAAAGGAAAGCAAATGTCAATAGAACTTGGATAGCTCCAACCTTGCCTGTGAAGCCTAGAGGACAGAAAACAACAACAAAGTTGATGGTGAAACAACTTCCTCTGTTGAAGCCTAGAAGGCTTCTAATCATTGTGACTCCAACAAGCACAAAACTTCCTTACCAAGCAGTGTTTTTGAGAAGGTTAGCAAACACTATAAAACTAGTTCCTCAACCCTTGGTGTGGATTGTGGTGGAAGCTAAAAGTGATTCCACTGAACTGCCAGAGATGCTGAGGAAGACTGGTATCATGTATAGGCATGTGGTTTTCAATGAGAACTTCACTGACTTGGATGCAGAACTGAATCACCAGAGAAATCTTGCACTTAAGCACATTGAACATCACAGGCTCAATGGGATTGTGCACTTTGCTGGTCTTTCCAATGTTTATGATCTCCAATTCTTCCAGCAGCTTAGAGATATTGAGGTGTTTGGAACATGGCCTACAGCATTTTTGGCTGCAAACAGGAAGAATGTTATAATAGAAGGACCTGTTTGTGATTCTTCTCAAGTCATTGGTTGGCATCTTAGAAGTATGAACAATGAAACTGACACTATCACTCCTCCCATTCATATTTCAAGTTTTGCTTTCAATAGCTCTATCCTTTGGGATCCAGAGAGATGGGGTCGCACTTCCTCTGTTCAAGACACCTCCAAGAATTCAATCAAGTTCGTGAAGCAAGTAGTGCTAGAAGATGAGGGTAAGTTGAAGGGAATTCCAGCAGAGGACTGTTCCAAAATCCTGCTATGGCGTTTCAACTTTCGTGCCCGTTCCATTTCAAATCACTAA 1011 0.4115 MGSVERSKKKIHLWKKAMLHFSLCFVMGFFTGLAPTGKSSFFSAATNGTTRFAPPPLDEMSQRKANVNRTWIAPTLPVKPRGQKTTTKLMVKQLPLLKPRRLLIIVTPTSTKLPYQAVFLRRLANTIKLVPQPLVWIVVEAKSDSTELPEMLRKTGIMYRHVVFNENFTDLDAELNHQRNLALKHIEHHRLNGIVHFAGLSNVYDLQFFQQLRDIEVFGTWPTAFLAANRKNVIIEGPVCDSSQVIGWHLRSMNNETDTITPPIHISSFAFNSSILWDPERWGRTSSVQDTSKNSIKFVKQVVLEDEGKLKGIPAEDCSKILLWRFNFRARSISNH* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0879 336 SUPERFAMILY Nucleotide-diphospho-sugar transferases 101 334 IPR029044 -
Lja1g0879 336 CDD GlcAT-I 104 330 IPR005027 GO:0015018|GO:0016020
Lja1g0879 336 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 331 IPR005027 GO:0015018|GO:0016020
Lja1g0879 336 Pfam Glycosyltransferase family 43 123 327 IPR005027 GO:0015018|GO:0016020
Lja1g0879 336 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 101 336 IPR029044 -
Lja1g0879 336 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9-RELATED 1 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0879 Lja-Chr1 8628605 8631615 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0879 1 332 Glycosyltransferase AT2G37090 60.458 5.78e-150 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0879 K20869 - gmx:100785607 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0879 1 8628605 8631615 Lja1g0879 1 8628605 8631615 ECH